Hb_004466_090

Information

Type -
Description -
Location Contig4466: 109251-109720
Sequence    

Annotation

kegg
ID rcu:RCOM_1446150
description hypothetical protein
nr
ID XP_002512879.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RH20
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1446150 PE=4 SV=1
Gene Ontology
ID GO:0016301
description snf1-related protein kinase regulatory subunit gamma-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004466_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004374_030 0.055198348 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
3 Hb_016277_030 0.0573431758 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
4 Hb_000784_060 0.0658270551 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002518_230 0.0809269577 - - -
6 Hb_000152_570 0.0831274642 - - 21 kDa protein precursor, putative [Ricinus communis]
7 Hb_004032_190 0.084065282 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
8 Hb_003894_180 0.08582707 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
9 Hb_002284_060 0.0875130305 - - sugar transporter, putative [Ricinus communis]
10 Hb_000017_140 0.0877016799 - - polygalacturonase, putative [Ricinus communis]
11 Hb_009421_070 0.0884536962 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
12 Hb_000193_070 0.0953862816 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
13 Hb_001369_390 0.098617695 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
14 Hb_000665_210 0.1005487238 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
15 Hb_001206_100 0.1019706744 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
16 Hb_002119_110 0.1030796877 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
17 Hb_002391_240 0.103607322 - - conserved hypothetical protein [Ricinus communis]
18 Hb_169077_030 0.1037499544 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
19 Hb_012395_060 0.1058675575 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
20 Hb_000364_090 0.106082019 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004466_090 Hb_004466_090 Hb_004374_030 Hb_004374_030 Hb_004466_090--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_004466_090--Hb_016277_030 Hb_000784_060 Hb_000784_060 Hb_004466_090--Hb_000784_060 Hb_002518_230 Hb_002518_230 Hb_004466_090--Hb_002518_230 Hb_000152_570 Hb_000152_570 Hb_004466_090--Hb_000152_570 Hb_004032_190 Hb_004032_190 Hb_004466_090--Hb_004032_190 Hb_004374_030--Hb_016277_030 Hb_004374_030--Hb_000784_060 Hb_000963_120 Hb_000963_120 Hb_004374_030--Hb_000963_120 Hb_002119_110 Hb_002119_110 Hb_004374_030--Hb_002119_110 Hb_002095_020 Hb_002095_020 Hb_004374_030--Hb_002095_020 Hb_005183_100 Hb_005183_100 Hb_016277_030--Hb_005183_100 Hb_001206_100 Hb_001206_100 Hb_016277_030--Hb_001206_100 Hb_016277_030--Hb_004032_190 Hb_016277_030--Hb_000784_060 Hb_000665_210 Hb_000665_210 Hb_000784_060--Hb_000665_210 Hb_009421_070 Hb_009421_070 Hb_000784_060--Hb_009421_070 Hb_001369_390 Hb_001369_390 Hb_000784_060--Hb_001369_390 Hb_012395_060 Hb_012395_060 Hb_002518_230--Hb_012395_060 Hb_000193_070 Hb_000193_070 Hb_002518_230--Hb_000193_070 Hb_002518_230--Hb_000152_570 Hb_002518_230--Hb_004374_030 Hb_000017_140 Hb_000017_140 Hb_002518_230--Hb_000017_140 Hb_000103_300 Hb_000103_300 Hb_000152_570--Hb_000103_300 Hb_000152_570--Hb_000193_070 Hb_002284_060 Hb_002284_060 Hb_000152_570--Hb_002284_060 Hb_002391_240 Hb_002391_240 Hb_000152_570--Hb_002391_240 Hb_003894_180 Hb_003894_180 Hb_000152_570--Hb_003894_180 Hb_007370_010 Hb_007370_010 Hb_000152_570--Hb_007370_010 Hb_000364_090 Hb_000364_090 Hb_004032_190--Hb_000364_090 Hb_004032_190--Hb_001206_100 Hb_004032_190--Hb_009421_070 Hb_004032_190--Hb_000784_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0927243 0.210704 0.640117 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.139295 0.565891

CAGE analysis