Hb_004474_010

Information

Type -
Description -
Location Contig4474: 1223-2414
Sequence    

Annotation

kegg
ID pda:103714095
description prefoldin subunit 1
nr
ID CDP14232.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068V120
description Coffea canephora DH200=94 genomic scaffold, scaffold_81 OS=Coffea canephora GN=GSCOC_T00040505001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004474_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_003349_070 0.1299281237 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
3 Hb_004635_060 0.1357840833 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
4 Hb_004223_260 0.1375039173 - - hypothetical protein F383_09277 [Gossypium arboreum]
5 Hb_008699_040 0.1418279772 - - -
6 Hb_004680_020 0.1456366761 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
7 Hb_001723_080 0.1457917174 - - hypothetical protein L484_026139 [Morus notabilis]
8 Hb_008705_090 0.1466989824 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
9 Hb_001007_050 0.1473917891 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
10 Hb_178968_170 0.1488856399 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
11 Hb_006351_110 0.1494002324 - - -
12 Hb_002260_020 0.1511274458 - - -
13 Hb_004159_050 0.155853538 - - conserved hypothetical protein [Ricinus communis]
14 Hb_080477_060 0.1591816578 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000106_100 0.1628967012 - - -
16 Hb_000819_070 0.1646619142 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
17 Hb_012395_210 0.1672419428 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001623_430 0.1744144718 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
19 Hb_000684_160 0.1747629911 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
20 Hb_010172_100 0.1748757378 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]

Gene co-expression network

sample Hb_004474_010 Hb_004474_010 Hb_003349_070 Hb_003349_070 Hb_004474_010--Hb_003349_070 Hb_004635_060 Hb_004635_060 Hb_004474_010--Hb_004635_060 Hb_004223_260 Hb_004223_260 Hb_004474_010--Hb_004223_260 Hb_008699_040 Hb_008699_040 Hb_004474_010--Hb_008699_040 Hb_004680_020 Hb_004680_020 Hb_004474_010--Hb_004680_020 Hb_001723_080 Hb_001723_080 Hb_004474_010--Hb_001723_080 Hb_001623_430 Hb_001623_430 Hb_003349_070--Hb_001623_430 Hb_003349_070--Hb_004223_260 Hb_000106_100 Hb_000106_100 Hb_003349_070--Hb_000106_100 Hb_000819_070 Hb_000819_070 Hb_003349_070--Hb_000819_070 Hb_000085_330 Hb_000085_330 Hb_003349_070--Hb_000085_330 Hb_183086_040 Hb_183086_040 Hb_003349_070--Hb_183086_040 Hb_000281_230 Hb_000281_230 Hb_004635_060--Hb_000281_230 Hb_004635_060--Hb_000819_070 Hb_006351_110 Hb_006351_110 Hb_004635_060--Hb_006351_110 Hb_004635_060--Hb_003349_070 Hb_004635_060--Hb_004223_260 Hb_004223_260--Hb_000819_070 Hb_004223_260--Hb_000106_100 Hb_000780_210 Hb_000780_210 Hb_004223_260--Hb_000780_210 Hb_006718_010 Hb_006718_010 Hb_004223_260--Hb_006718_010 Hb_004223_260--Hb_001623_430 Hb_000847_140 Hb_000847_140 Hb_008699_040--Hb_000847_140 Hb_008699_040--Hb_001723_080 Hb_075653_020 Hb_075653_020 Hb_008699_040--Hb_075653_020 Hb_005539_210 Hb_005539_210 Hb_008699_040--Hb_005539_210 Hb_008699_040--Hb_004680_020 Hb_005009_020 Hb_005009_020 Hb_004680_020--Hb_005009_020 Hb_004680_020--Hb_075653_020 Hb_008705_090 Hb_008705_090 Hb_004680_020--Hb_008705_090 Hb_004680_020--Hb_001723_080 Hb_000454_110 Hb_000454_110 Hb_001723_080--Hb_000454_110 Hb_001012_040 Hb_001012_040 Hb_001723_080--Hb_001012_040 Hb_000300_400 Hb_000300_400 Hb_001723_080--Hb_000300_400 Hb_001723_080--Hb_008705_090 Hb_012395_200 Hb_012395_200 Hb_001723_080--Hb_012395_200 Hb_012395_210 Hb_012395_210 Hb_001723_080--Hb_012395_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33864 0.0351432 0.0817511 0.518411 2.74546 8.65826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9042 32.6211 8.98087 3.57897 0.124441

CAGE analysis