Hb_004474_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4474: 58501-64385
Sequence    

Annotation

kegg
ID rcu:RCOM_1482430
description Disease resistance protein RPP8, putative (EC:3.1.3.16)
nr
ID XP_002524237.1
description Disease resistance protein RPP8, putative [Ricinus communis]
swissprot
ID Q9SX38
description Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2
trembl
ID B9SE18
description Disease resistance protein RPP8, putative OS=Ricinus communis GN=RCOM_1482430 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance protein rpp8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004474_070 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
2 Hb_002303_050 0.0301954299 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
3 Hb_001953_010 0.0547942157 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
4 Hb_128216_010 0.0706013931 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
5 Hb_001675_350 0.0807599988 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
6 Hb_002804_070 0.0841872126 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
7 Hb_000139_390 0.08615658 - - -
8 Hb_001022_070 0.0868681997 - - cell wall invertase [Manihot esculenta]
9 Hb_005946_200 0.0942598148 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
10 Hb_000000_320 0.0972385683 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
11 Hb_004112_070 0.0977504183 - - -
12 Hb_112145_010 0.1056066714 - - kinase, putative [Ricinus communis]
13 Hb_000120_600 0.1090108723 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
14 Hb_004374_170 0.1185015484 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
15 Hb_001856_130 0.1227923693 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
16 Hb_001221_050 0.1229984699 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
17 Hb_003023_030 0.1235186642 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
18 Hb_002170_010 0.1299141235 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
19 Hb_006951_010 0.1299983277 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
20 Hb_000120_560 0.1306427724 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_004474_070 Hb_004474_070 Hb_002303_050 Hb_002303_050 Hb_004474_070--Hb_002303_050 Hb_001953_010 Hb_001953_010 Hb_004474_070--Hb_001953_010 Hb_128216_010 Hb_128216_010 Hb_004474_070--Hb_128216_010 Hb_001675_350 Hb_001675_350 Hb_004474_070--Hb_001675_350 Hb_002804_070 Hb_002804_070 Hb_004474_070--Hb_002804_070 Hb_000139_390 Hb_000139_390 Hb_004474_070--Hb_000139_390 Hb_002303_050--Hb_001953_010 Hb_005946_200 Hb_005946_200 Hb_002303_050--Hb_005946_200 Hb_002303_050--Hb_001675_350 Hb_002303_050--Hb_002804_070 Hb_002303_050--Hb_128216_010 Hb_000000_320 Hb_000000_320 Hb_001953_010--Hb_000000_320 Hb_001953_010--Hb_002804_070 Hb_001022_070 Hb_001022_070 Hb_001953_010--Hb_001022_070 Hb_001953_010--Hb_128216_010 Hb_002170_010 Hb_002170_010 Hb_128216_010--Hb_002170_010 Hb_112145_010 Hb_112145_010 Hb_128216_010--Hb_112145_010 Hb_128216_010--Hb_002804_070 Hb_001675_350--Hb_001953_010 Hb_001675_350--Hb_000139_390 Hb_000120_600 Hb_000120_600 Hb_001675_350--Hb_000120_600 Hb_001675_350--Hb_002804_070 Hb_004374_170 Hb_004374_170 Hb_002804_070--Hb_004374_170 Hb_002804_070--Hb_005946_200 Hb_002804_070--Hb_000120_600 Hb_004112_070 Hb_004112_070 Hb_000139_390--Hb_004112_070 Hb_000139_390--Hb_001953_010 Hb_000175_370 Hb_000175_370 Hb_000139_390--Hb_000175_370 Hb_000120_560 Hb_000120_560 Hb_000139_390--Hb_000120_560 Hb_000684_110 Hb_000684_110 Hb_000139_390--Hb_000684_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0829891 0.0578487 0.188851 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.025898

CAGE analysis