Hb_004480_040

Information

Type -
Description -
Location Contig4480: 31016-45154
Sequence    

Annotation

kegg
ID rcu:RCOM_0205780
description hypothetical protein
nr
ID XP_012076280.1
description PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9M086
description DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana GN=DCAF1 PE=1 SV=2
trembl
ID B9SPT7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0205780 PE=4 SV=1
Gene Ontology
ID GO:0080008
description ddb1- and cul4-associated factor homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43099: 31387-36787 , PASA_asmbl_43100: 36817-43423 , PASA_asmbl_43101: 44976-45225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004480_040 0.0 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
2 Hb_000169_130 0.0596137466 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
3 Hb_000304_050 0.0598612855 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
4 Hb_000236_220 0.0631988423 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
5 Hb_000441_070 0.0638754252 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
6 Hb_000832_320 0.0661219501 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
7 Hb_000556_170 0.0663427419 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
8 Hb_034243_020 0.0711702776 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
9 Hb_000032_010 0.0727651639 - - crooked neck protein, putative [Ricinus communis]
10 Hb_052764_060 0.0733509593 - - XPA-binding protein, putative [Ricinus communis]
11 Hb_157966_010 0.0766064013 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
12 Hb_006663_040 0.0795657573 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
13 Hb_144831_010 0.0808370739 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
14 Hb_001718_090 0.081294377 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
15 Hb_000345_150 0.0830633185 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
16 Hb_004543_030 0.0835572719 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
17 Hb_000544_060 0.083569983 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
18 Hb_000977_120 0.0838439307 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
19 Hb_002022_070 0.0841997307 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
20 Hb_074969_010 0.0842845891 - - hypothetical protein JCGZ_23339 [Jatropha curcas]

Gene co-expression network

sample Hb_004480_040 Hb_004480_040 Hb_000169_130 Hb_000169_130 Hb_004480_040--Hb_000169_130 Hb_000304_050 Hb_000304_050 Hb_004480_040--Hb_000304_050 Hb_000236_220 Hb_000236_220 Hb_004480_040--Hb_000236_220 Hb_000441_070 Hb_000441_070 Hb_004480_040--Hb_000441_070 Hb_000832_320 Hb_000832_320 Hb_004480_040--Hb_000832_320 Hb_000556_170 Hb_000556_170 Hb_004480_040--Hb_000556_170 Hb_010738_010 Hb_010738_010 Hb_000169_130--Hb_010738_010 Hb_003785_040 Hb_003785_040 Hb_000169_130--Hb_003785_040 Hb_000169_130--Hb_000441_070 Hb_065525_060 Hb_065525_060 Hb_000169_130--Hb_065525_060 Hb_003633_070 Hb_003633_070 Hb_000169_130--Hb_003633_070 Hb_034243_020 Hb_034243_020 Hb_000304_050--Hb_034243_020 Hb_000264_100 Hb_000264_100 Hb_000304_050--Hb_000264_100 Hb_001247_070 Hb_001247_070 Hb_000304_050--Hb_001247_070 Hb_000032_010 Hb_000032_010 Hb_000304_050--Hb_000032_010 Hb_000304_050--Hb_000169_130 Hb_093084_070 Hb_093084_070 Hb_000236_220--Hb_093084_070 Hb_003373_040 Hb_003373_040 Hb_000236_220--Hb_003373_040 Hb_005260_010 Hb_005260_010 Hb_000236_220--Hb_005260_010 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000236_220--Hb_000441_070 Hb_000046_010 Hb_000046_010 Hb_000441_070--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000441_070--Hb_001718_090 Hb_000322_150 Hb_000322_150 Hb_000441_070--Hb_000322_150 Hb_076693_020 Hb_076693_020 Hb_000441_070--Hb_076693_020 Hb_006663_040 Hb_006663_040 Hb_000832_320--Hb_006663_040 Hb_018133_050 Hb_018133_050 Hb_000832_320--Hb_018133_050 Hb_052764_060 Hb_052764_060 Hb_000832_320--Hb_052764_060 Hb_000544_060 Hb_000544_060 Hb_000832_320--Hb_000544_060 Hb_000959_040 Hb_000959_040 Hb_000832_320--Hb_000959_040 Hb_000640_310 Hb_000640_310 Hb_000556_170--Hb_000640_310 Hb_000236_470 Hb_000236_470 Hb_000556_170--Hb_000236_470 Hb_000556_170--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_000556_170--Hb_001799_050 Hb_140049_040 Hb_140049_040 Hb_000556_170--Hb_140049_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5537 25.9201 8.18014 5.77243 16.9454 15.4209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.05536 7.66673 9.38351 12.3894 9.55013

CAGE analysis