Hb_004480_070

Information

Type -
Description -
Location Contig4480: 68360-69996
Sequence    

Annotation

kegg
ID rcu:RCOM_0205440
description cytochrome P450, putative (EC:1.14.13.77)
nr
ID XP_002528002.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID I7C6E8
description Beta-amyrin 28-oxidase OS=Panax ginseng PE=2 SV=1
trembl
ID B9SPT3
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0205440 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004480_070 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_001668_030 0.18342981 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001767_020 0.2091599331 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
4 Hb_000352_130 0.2179013228 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
5 Hb_000580_060 0.2211756612 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
6 Hb_000211_080 0.2249727751 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_001775_040 0.2267630531 - - -
8 Hb_000016_180 0.2302974898 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
9 Hb_002253_110 0.2324212755 - - cysteine desulfurylase, putative [Ricinus communis]
10 Hb_010290_020 0.2326872451 - - RAB6-interacting protein, putative [Ricinus communis]
11 Hb_000213_060 0.235423483 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
12 Hb_004460_020 0.2378544119 - - chaperone protein DNAj, putative [Ricinus communis]
13 Hb_001159_210 0.2385938038 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
14 Hb_000176_060 0.2387430074 - - unnamed protein product [Vitis vinifera]
15 Hb_012150_070 0.2391131671 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
16 Hb_002326_060 0.2399066821 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
17 Hb_172256_010 0.2417118127 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_004102_130 0.2504776038 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004206_040 0.2520624519 - - cytochrome P450, putative [Ricinus communis]
20 Hb_005568_070 0.2522671531 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]

Gene co-expression network

sample Hb_004480_070 Hb_004480_070 Hb_001668_030 Hb_001668_030 Hb_004480_070--Hb_001668_030 Hb_001767_020 Hb_001767_020 Hb_004480_070--Hb_001767_020 Hb_000352_130 Hb_000352_130 Hb_004480_070--Hb_000352_130 Hb_000580_060 Hb_000580_060 Hb_004480_070--Hb_000580_060 Hb_000211_080 Hb_000211_080 Hb_004480_070--Hb_000211_080 Hb_001775_040 Hb_001775_040 Hb_004480_070--Hb_001775_040 Hb_002253_110 Hb_002253_110 Hb_001668_030--Hb_002253_110 Hb_001513_020 Hb_001513_020 Hb_001668_030--Hb_001513_020 Hb_001675_060 Hb_001675_060 Hb_001668_030--Hb_001675_060 Hb_001668_030--Hb_001767_020 Hb_004460_020 Hb_004460_020 Hb_001668_030--Hb_004460_020 Hb_001767_020--Hb_004460_020 Hb_041774_010 Hb_041774_010 Hb_001767_020--Hb_041774_010 Hb_005867_080 Hb_005867_080 Hb_001767_020--Hb_005867_080 Hb_001767_020--Hb_001775_040 Hb_008147_030 Hb_008147_030 Hb_001767_020--Hb_008147_030 Hb_064201_010 Hb_064201_010 Hb_000352_130--Hb_064201_010 Hb_004206_040 Hb_004206_040 Hb_000352_130--Hb_004206_040 Hb_001146_070 Hb_001146_070 Hb_000352_130--Hb_001146_070 Hb_000185_090 Hb_000185_090 Hb_000352_130--Hb_000185_090 Hb_005271_030 Hb_005271_030 Hb_000352_130--Hb_005271_030 Hb_000213_060 Hb_000213_060 Hb_000352_130--Hb_000213_060 Hb_010290_020 Hb_010290_020 Hb_000580_060--Hb_010290_020 Hb_000441_230 Hb_000441_230 Hb_000580_060--Hb_000441_230 Hb_004307_040 Hb_004307_040 Hb_000580_060--Hb_004307_040 Hb_000454_030 Hb_000454_030 Hb_000580_060--Hb_000454_030 Hb_003360_020 Hb_003360_020 Hb_000580_060--Hb_003360_020 Hb_005568_070 Hb_005568_070 Hb_000580_060--Hb_005568_070 Hb_172256_010 Hb_172256_010 Hb_000211_080--Hb_172256_010 Hb_003673_020 Hb_003673_020 Hb_000211_080--Hb_003673_020 Hb_000779_040 Hb_000779_040 Hb_000211_080--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_000211_080--Hb_000792_110 Hb_035360_010 Hb_035360_010 Hb_000211_080--Hb_035360_010 Hb_000211_090 Hb_000211_090 Hb_000211_080--Hb_000211_090 Hb_001775_040--Hb_004460_020 Hb_000012_300 Hb_000012_300 Hb_001775_040--Hb_000012_300 Hb_001775_040--Hb_001668_030 Hb_004102_130 Hb_004102_130 Hb_001775_040--Hb_004102_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186924 0.0621985 0 0 0.358078 0.615364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0328953 0 0.0485352 0.0206729 0

CAGE analysis