Hb_004480_100

Information

Type -
Description -
Location Contig4480: 82456-87137
Sequence    

Annotation

kegg
ID rcu:RCOM_0205450
description RNA binding protein, putative
nr
ID XP_012076276.1
description PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
swissprot
ID Q8CGZ0
description Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus GN=Cherp PE=1 SV=1
trembl
ID A0A067KB08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06977 PE=4 SV=1
Gene Ontology
ID GO:0003723
description calcium homeostasis endoplasmic reticulum protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43102: 82454-87684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004480_100 0.0 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
2 Hb_002768_060 0.0659099658 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
3 Hb_000789_200 0.0680501973 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
4 Hb_002908_050 0.0688686504 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
5 Hb_001789_150 0.0732231653 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
6 Hb_001876_010 0.0742962622 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
7 Hb_001951_220 0.0781834336 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
8 Hb_000309_050 0.0802792121 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
9 Hb_000984_170 0.0824551953 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
10 Hb_000189_550 0.0844700071 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
11 Hb_001352_020 0.085321848 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
12 Hb_000504_180 0.0856862469 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_007023_030 0.0860441403 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
14 Hb_000656_010 0.0879233989 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
15 Hb_000363_040 0.0888621679 - - Protein transport protein Sec24A, putative [Ricinus communis]
16 Hb_000327_180 0.0908961202 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
17 Hb_001975_150 0.0914776672 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
18 Hb_000352_310 0.0918468375 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
19 Hb_005305_050 0.0926608211 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
20 Hb_001242_130 0.0938133629 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_004480_100 Hb_004480_100 Hb_002768_060 Hb_002768_060 Hb_004480_100--Hb_002768_060 Hb_000789_200 Hb_000789_200 Hb_004480_100--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_004480_100--Hb_002908_050 Hb_001789_150 Hb_001789_150 Hb_004480_100--Hb_001789_150 Hb_001876_010 Hb_001876_010 Hb_004480_100--Hb_001876_010 Hb_001951_220 Hb_001951_220 Hb_004480_100--Hb_001951_220 Hb_002768_060--Hb_001876_010 Hb_003544_160 Hb_003544_160 Hb_002768_060--Hb_003544_160 Hb_002768_060--Hb_000789_200 Hb_002768_060--Hb_002908_050 Hb_004679_030 Hb_004679_030 Hb_002768_060--Hb_004679_030 Hb_027073_020 Hb_027073_020 Hb_000789_200--Hb_027073_020 Hb_000656_010 Hb_000656_010 Hb_000789_200--Hb_000656_010 Hb_000720_050 Hb_000720_050 Hb_000789_200--Hb_000720_050 Hb_001789_110 Hb_001789_110 Hb_000789_200--Hb_001789_110 Hb_002908_050--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_002908_050--Hb_000189_550 Hb_000984_170 Hb_000984_170 Hb_002908_050--Hb_000984_170 Hb_000011_060 Hb_000011_060 Hb_002908_050--Hb_000011_060 Hb_000363_040 Hb_000363_040 Hb_002908_050--Hb_000363_040 Hb_000012_310 Hb_000012_310 Hb_001789_150--Hb_000012_310 Hb_000574_450 Hb_000574_450 Hb_001789_150--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_001789_150--Hb_010515_020 Hb_000497_300 Hb_000497_300 Hb_001789_150--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001789_150--Hb_001352_020 Hb_001876_010--Hb_000011_060 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000028_390 Hb_000028_390 Hb_001876_010--Hb_000028_390 Hb_001876_010--Hb_000984_170 Hb_000504_180 Hb_000504_180 Hb_001951_220--Hb_000504_180 Hb_000917_230 Hb_000917_230 Hb_001951_220--Hb_000917_230 Hb_002686_090 Hb_002686_090 Hb_001951_220--Hb_002686_090 Hb_001716_040 Hb_001716_040 Hb_001951_220--Hb_001716_040 Hb_000186_050 Hb_000186_050 Hb_001951_220--Hb_000186_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.58922 11.7268 6.1831 15.5799 7.09275 10.2993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2008 11.5169 14.9086 19.2657 21.9447

CAGE analysis