Hb_004483_020

Information

Type -
Description -
Location Contig4483: 14308-47844
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43104: 43854-44213
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004483_020 0.0 - - -
2 Hb_002426_010 0.1633622101 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_000510_220 0.2030832977 - - -
4 Hb_089341_010 0.2239362236 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
5 Hb_004108_010 0.2949642262 - - -
6 Hb_093432_020 0.3001641135 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
7 Hb_002374_330 0.3005017266 - - -
8 Hb_136850_040 0.301250729 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000225_050 0.3019936495 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_002928_070 0.302211124 - - -
11 Hb_003228_070 0.3128651728 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009189_060 0.3200955088 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
13 Hb_009922_010 0.3209529822 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
14 Hb_001501_040 0.3226937552 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
15 Hb_000173_200 0.3229705167 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002003_110 0.3248861469 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
17 Hb_033623_010 0.3250158293 - - -
18 Hb_033926_010 0.325538922 - - -
19 Hb_144951_010 0.3279382 - - putative reverse transcriptase [Oryza sativa Japonica Group]
20 Hb_005214_020 0.3314276653 - - hypothetical protein JCGZ_12886 [Jatropha curcas]

Gene co-expression network

sample Hb_004483_020 Hb_004483_020 Hb_002426_010 Hb_002426_010 Hb_004483_020--Hb_002426_010 Hb_000510_220 Hb_000510_220 Hb_004483_020--Hb_000510_220 Hb_089341_010 Hb_089341_010 Hb_004483_020--Hb_089341_010 Hb_004108_010 Hb_004108_010 Hb_004483_020--Hb_004108_010 Hb_093432_020 Hb_093432_020 Hb_004483_020--Hb_093432_020 Hb_002374_330 Hb_002374_330 Hb_004483_020--Hb_002374_330 Hb_002426_010--Hb_000510_220 Hb_009189_060 Hb_009189_060 Hb_002426_010--Hb_009189_060 Hb_002426_010--Hb_089341_010 Hb_001031_060 Hb_001031_060 Hb_002426_010--Hb_001031_060 Hb_006634_010 Hb_006634_010 Hb_002426_010--Hb_006634_010 Hb_000510_220--Hb_001031_060 Hb_001501_040 Hb_001501_040 Hb_000510_220--Hb_001501_040 Hb_000510_220--Hb_009189_060 Hb_000510_220--Hb_006634_010 Hb_002003_110 Hb_002003_110 Hb_089341_010--Hb_002003_110 Hb_001303_070 Hb_001303_070 Hb_089341_010--Hb_001303_070 Hb_137515_010 Hb_137515_010 Hb_089341_010--Hb_137515_010 Hb_061365_010 Hb_061365_010 Hb_089341_010--Hb_061365_010 Hb_033623_010 Hb_033623_010 Hb_004108_010--Hb_033623_010 Hb_189237_010 Hb_189237_010 Hb_004108_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_004108_010--Hb_144951_010 Hb_005389_010 Hb_005389_010 Hb_004108_010--Hb_005389_010 Hb_004108_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_004108_010--Hb_002928_070 Hb_093432_020--Hb_002928_070 Hb_009922_010 Hb_009922_010 Hb_093432_020--Hb_009922_010 Hb_053643_010 Hb_053643_010 Hb_093432_020--Hb_053643_010 Hb_093432_020--Hb_061365_010 Hb_093432_020--Hb_137515_010 Hb_002157_250 Hb_002157_250 Hb_002374_330--Hb_002157_250 Hb_074184_010 Hb_074184_010 Hb_002374_330--Hb_074184_010 Hb_008203_020 Hb_008203_020 Hb_002374_330--Hb_008203_020 Hb_000540_220 Hb_000540_220 Hb_002374_330--Hb_000540_220 Hb_003939_020 Hb_003939_020 Hb_002374_330--Hb_003939_020 Hb_011161_030 Hb_011161_030 Hb_002374_330--Hb_011161_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0542582 0.0160875 0 0.0190723 0.0179098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis