Hb_004483_040

Information

Type -
Description -
Location Contig4483: 49063-51141
Sequence    

Annotation

kegg
ID rcu:RCOM_0673440
description hypothetical protein
nr
ID KDP44628.1
description hypothetical protein JCGZ_22047 [Jatropha curcas]
swissprot
ID A2RRV3
description Protein PAT1 homolog 1 OS=Danio rerio GN=patl1 PE=1 SV=1
trembl
ID A0A067LBN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22047 PE=4 SV=1
Gene Ontology
ID GO:0016853
description protein pat1 homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004483_040 0.0 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
2 Hb_000025_280 0.0440782008 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
3 Hb_000069_470 0.0557710214 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
4 Hb_011242_060 0.0693981298 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
5 Hb_002085_030 0.0701063814 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
6 Hb_000661_130 0.0719213668 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
7 Hb_005539_090 0.0722986397 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
8 Hb_000977_120 0.072421369 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
9 Hb_009767_080 0.0725955086 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
10 Hb_000321_150 0.0763405833 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
11 Hb_002174_030 0.0794104606 - - transcription elongation factor s-II, putative [Ricinus communis]
12 Hb_002253_080 0.0796841625 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
13 Hb_003729_030 0.0818314006 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
14 Hb_003470_080 0.0829997963 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
15 Hb_001767_140 0.0833147855 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
16 Hb_031042_050 0.0835495586 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
17 Hb_000665_230 0.0842954978 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
18 Hb_000265_090 0.0850512423 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
19 Hb_008253_030 0.085493526 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
20 Hb_006117_080 0.0861420048 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004483_040 Hb_004483_040 Hb_000025_280 Hb_000025_280 Hb_004483_040--Hb_000025_280 Hb_000069_470 Hb_000069_470 Hb_004483_040--Hb_000069_470 Hb_011242_060 Hb_011242_060 Hb_004483_040--Hb_011242_060 Hb_002085_030 Hb_002085_030 Hb_004483_040--Hb_002085_030 Hb_000661_130 Hb_000661_130 Hb_004483_040--Hb_000661_130 Hb_005539_090 Hb_005539_090 Hb_004483_040--Hb_005539_090 Hb_000025_280--Hb_000069_470 Hb_000017_220 Hb_000017_220 Hb_000025_280--Hb_000017_220 Hb_000317_370 Hb_000317_370 Hb_000025_280--Hb_000317_370 Hb_004586_290 Hb_004586_290 Hb_000025_280--Hb_004586_290 Hb_031042_050 Hb_031042_050 Hb_000025_280--Hb_031042_050 Hb_000069_470--Hb_011242_060 Hb_000069_470--Hb_031042_050 Hb_006117_080 Hb_006117_080 Hb_000069_470--Hb_006117_080 Hb_001104_190 Hb_001104_190 Hb_000069_470--Hb_001104_190 Hb_003581_170 Hb_003581_170 Hb_011242_060--Hb_003581_170 Hb_000265_090 Hb_000265_090 Hb_011242_060--Hb_000265_090 Hb_003729_030 Hb_003729_030 Hb_011242_060--Hb_003729_030 Hb_000836_020 Hb_000836_020 Hb_011242_060--Hb_000836_020 Hb_000321_150 Hb_000321_150 Hb_011242_060--Hb_000321_150 Hb_012305_030 Hb_012305_030 Hb_002085_030--Hb_012305_030 Hb_012194_030 Hb_012194_030 Hb_002085_030--Hb_012194_030 Hb_003866_080 Hb_003866_080 Hb_002085_030--Hb_003866_080 Hb_001767_140 Hb_001767_140 Hb_002085_030--Hb_001767_140 Hb_001279_120 Hb_001279_120 Hb_002085_030--Hb_001279_120 Hb_000329_370 Hb_000329_370 Hb_002085_030--Hb_000329_370 Hb_019430_020 Hb_019430_020 Hb_000661_130--Hb_019430_020 Hb_000661_130--Hb_000321_150 Hb_000661_130--Hb_006117_080 Hb_000661_130--Hb_000069_470 Hb_010712_040 Hb_010712_040 Hb_000661_130--Hb_010712_040 Hb_000012_140 Hb_000012_140 Hb_005539_090--Hb_000012_140 Hb_007576_120 Hb_007576_120 Hb_005539_090--Hb_007576_120 Hb_000977_120 Hb_000977_120 Hb_005539_090--Hb_000977_120 Hb_005539_090--Hb_000321_150 Hb_000960_100 Hb_000960_100 Hb_005539_090--Hb_000960_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6869 30.0514 10.1534 11.3656 12.5676 16.741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.57809 8.48911 12.9174 16.1161 17.9966

CAGE analysis