Hb_004488_010

Information

Type -
Description -
Location Contig4488: 18979-22757
Sequence    

Annotation

kegg
ID cit:102618432
description bark storage protein A-like
nr
ID KDO47238.1
description hypothetical protein CISIN_1g019168mg [Citrus sinensis]
swissprot
ID Q07469
description Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1
trembl
ID A0A067DWQ3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019168mg PE=4 SV=1
Gene Ontology
ID GO:0003824
description mta sah

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43107: 18834-22834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004488_010 0.0 - - hypothetical protein CISIN_1g019168mg [Citrus sinensis]
2 Hb_000142_020 0.1868479728 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
3 Hb_000877_090 0.1870104336 - - allergenic-related protein Pt2L4 [Manihot esculenta]
4 Hb_005588_020 0.1987100068 - - PREDICTED: patatin-like protein 2 [Vitis vinifera]
5 Hb_038758_010 0.2045059674 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_000977_160 0.2077851297 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
7 Hb_066262_020 0.2174847971 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
8 Hb_002067_110 0.2189233953 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
9 Hb_002019_030 0.2194606135 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_188168_010 0.2199852759 - - Arylacetamide deacetylase, putative [Ricinus communis]
11 Hb_001903_020 0.2222974352 - - -
12 Hb_128912_010 0.2228569322 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
13 Hb_007785_020 0.2237678149 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_039814_010 0.2240882641 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
15 Hb_000844_020 0.2248998859 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
16 Hb_000002_160 0.2266326845 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
17 Hb_187024_020 0.2266748536 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
18 Hb_080293_010 0.2267297168 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
19 Hb_001659_030 0.2269257493 - - -
20 Hb_003344_020 0.2270046097 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]

Gene co-expression network

sample Hb_004488_010 Hb_004488_010 Hb_000142_020 Hb_000142_020 Hb_004488_010--Hb_000142_020 Hb_000877_090 Hb_000877_090 Hb_004488_010--Hb_000877_090 Hb_005588_020 Hb_005588_020 Hb_004488_010--Hb_005588_020 Hb_038758_010 Hb_038758_010 Hb_004488_010--Hb_038758_010 Hb_000977_160 Hb_000977_160 Hb_004488_010--Hb_000977_160 Hb_066262_020 Hb_066262_020 Hb_004488_010--Hb_066262_020 Hb_000142_020--Hb_038758_010 Hb_002217_440 Hb_002217_440 Hb_000142_020--Hb_002217_440 Hb_000142_020--Hb_000877_090 Hb_000625_110 Hb_000625_110 Hb_000142_020--Hb_000625_110 Hb_001810_010 Hb_001810_010 Hb_000142_020--Hb_001810_010 Hb_000260_320 Hb_000260_320 Hb_000877_090--Hb_000260_320 Hb_012055_100 Hb_012055_100 Hb_000877_090--Hb_012055_100 Hb_002019_030 Hb_002019_030 Hb_000877_090--Hb_002019_030 Hb_003376_340 Hb_003376_340 Hb_000877_090--Hb_003376_340 Hb_000532_060 Hb_000532_060 Hb_000877_090--Hb_000532_060 Hb_046117_050 Hb_046117_050 Hb_000877_090--Hb_046117_050 Hb_000070_140 Hb_000070_140 Hb_005588_020--Hb_000070_140 Hb_001486_130 Hb_001486_130 Hb_005588_020--Hb_001486_130 Hb_012268_010 Hb_012268_010 Hb_005588_020--Hb_012268_010 Hb_001268_070 Hb_001268_070 Hb_005588_020--Hb_001268_070 Hb_005054_300 Hb_005054_300 Hb_005588_020--Hb_005054_300 Hb_005588_020--Hb_000977_160 Hb_038758_010--Hb_000877_090 Hb_038758_010--Hb_002217_440 Hb_038758_010--Hb_000625_110 Hb_038758_010--Hb_001810_010 Hb_038758_010--Hb_012055_100 Hb_005396_100 Hb_005396_100 Hb_000977_160--Hb_005396_100 Hb_001363_010 Hb_001363_010 Hb_000977_160--Hb_001363_010 Hb_002067_110 Hb_002067_110 Hb_000977_160--Hb_002067_110 Hb_006353_010 Hb_006353_010 Hb_000977_160--Hb_006353_010 Hb_000844_020 Hb_000844_020 Hb_000977_160--Hb_000844_020 Hb_123238_010 Hb_123238_010 Hb_000977_160--Hb_123238_010 Hb_064855_010 Hb_064855_010 Hb_066262_020--Hb_064855_010 Hb_066262_020--Hb_000844_020 Hb_066262_020--Hb_002067_110 Hb_001271_040 Hb_001271_040 Hb_066262_020--Hb_001271_040 Hb_006616_050 Hb_006616_050 Hb_066262_020--Hb_006616_050 Hb_068447_010 Hb_068447_010 Hb_066262_020--Hb_068447_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.75055 0.0162463 0.0884378 0.0813542 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.645918 0 0 1.82228 0

CAGE analysis