Hb_004491_010

Information

Type -
Description -
Location Contig4491: 14193-19371
Sequence    

Annotation

kegg
ID rcu:RCOM_0547720
description 60S ribosomal protein L51, putative
nr
ID XP_002530576.1
description 60S ribosomal protein L51, putative [Ricinus communis]
swissprot
ID Q9UUC8
description 54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl51 PE=3 SV=1
trembl
ID B9SX57
description 60S ribosomal protein L51, putative OS=Ricinus communis GN=RCOM_0547720 PE=4 SV=1
Gene Ontology
ID GO:0005739
description 54s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43112: 14286-19316 , PASA_asmbl_43113: 14290-19340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004491_010 0.0 - - 60S ribosomal protein L51, putative [Ricinus communis]
2 Hb_002685_170 0.0504418405 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
3 Hb_000853_420 0.0605273922 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_028995_040 0.0637069582 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
5 Hb_002603_120 0.0660712845 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
6 Hb_000041_270 0.0661400132 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
7 Hb_003126_080 0.0667822072 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
8 Hb_005993_040 0.0704683615 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
9 Hb_004223_280 0.0716911375 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
10 Hb_000853_170 0.0718458697 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
11 Hb_001552_020 0.0723463905 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
12 Hb_001404_100 0.0746942934 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
13 Hb_000656_400 0.0752462683 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
14 Hb_000771_120 0.0759732077 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
15 Hb_015746_010 0.0766009298 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
16 Hb_003078_040 0.0781478051 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
17 Hb_000030_300 0.0786992196 - - Thioredoxin, putative [Ricinus communis]
18 Hb_000661_250 0.079784858 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
19 Hb_003125_200 0.0798024814 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
20 Hb_002043_190 0.0802453885 - - rwd domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004491_010 Hb_004491_010 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_028995_040 Hb_028995_040 Hb_004491_010--Hb_028995_040 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_003126_080 Hb_003126_080 Hb_004491_010--Hb_003126_080 Hb_005357_030 Hb_005357_030 Hb_002685_170--Hb_005357_030 Hb_004223_280 Hb_004223_280 Hb_002685_170--Hb_004223_280 Hb_007590_050 Hb_007590_050 Hb_002685_170--Hb_007590_050 Hb_002685_170--Hb_028995_040 Hb_002685_170--Hb_003126_080 Hb_000853_170 Hb_000853_170 Hb_000853_420--Hb_000853_170 Hb_000853_420--Hb_002603_120 Hb_011671_430 Hb_011671_430 Hb_000853_420--Hb_011671_430 Hb_000613_090 Hb_000613_090 Hb_000853_420--Hb_000613_090 Hb_001006_140 Hb_001006_140 Hb_000853_420--Hb_001006_140 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_000866_270 Hb_000866_270 Hb_028995_040--Hb_000866_270 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140 Hb_001595_030 Hb_001595_030 Hb_002603_120--Hb_001595_030 Hb_000030_300 Hb_000030_300 Hb_002603_120--Hb_000030_300 Hb_000629_010 Hb_000629_010 Hb_002603_120--Hb_000629_010 Hb_005188_050 Hb_005188_050 Hb_002603_120--Hb_005188_050 Hb_000210_180 Hb_000210_180 Hb_000041_270--Hb_000210_180 Hb_096563_010 Hb_096563_010 Hb_000041_270--Hb_096563_010 Hb_003126_050 Hb_003126_050 Hb_000041_270--Hb_003126_050 Hb_000757_060 Hb_000757_060 Hb_000041_270--Hb_000757_060 Hb_001481_090 Hb_001481_090 Hb_000041_270--Hb_001481_090 Hb_000656_400 Hb_000656_400 Hb_003126_080--Hb_000656_400 Hb_005993_040 Hb_005993_040 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_003126_080--Hb_004223_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.6215 62.408 45.5777 28.0947 77.6603 74.5858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.3592 102.931 73.5003 60.8763 25.9307

CAGE analysis