Hb_004495_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4495: 8000-9917
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID XP_012065986.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004495_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_001341_200 0.125360064 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
3 Hb_029584_090 0.1260357628 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
4 Hb_000139_140 0.1273212547 - - Acyl-CoA synthetase [Ricinus communis]
5 Hb_003607_060 0.1618404204 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
6 Hb_005181_180 0.1655511097 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002026_080 0.1662383689 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
8 Hb_000702_060 0.1676869489 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012545_090 0.1681533147 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
10 Hb_002301_250 0.1722816026 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
11 Hb_004195_090 0.1790710454 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
12 Hb_009646_010 0.181501726 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
13 Hb_000834_040 0.1834971606 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
14 Hb_002025_350 0.1839562911 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
15 Hb_127886_010 0.1882725699 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_002662_090 0.1898041348 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
17 Hb_002170_020 0.1900538199 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
18 Hb_003227_010 0.1904780353 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
19 Hb_128589_010 0.1910870113 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
20 Hb_000005_340 0.1910912113 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004495_020 Hb_004495_020 Hb_001341_200 Hb_001341_200 Hb_004495_020--Hb_001341_200 Hb_029584_090 Hb_029584_090 Hb_004495_020--Hb_029584_090 Hb_000139_140 Hb_000139_140 Hb_004495_020--Hb_000139_140 Hb_003607_060 Hb_003607_060 Hb_004495_020--Hb_003607_060 Hb_005181_180 Hb_005181_180 Hb_004495_020--Hb_005181_180 Hb_002026_080 Hb_002026_080 Hb_004495_020--Hb_002026_080 Hb_009646_010 Hb_009646_010 Hb_001341_200--Hb_009646_010 Hb_001341_200--Hb_005181_180 Hb_001341_200--Hb_029584_090 Hb_004195_090 Hb_004195_090 Hb_001341_200--Hb_004195_090 Hb_001341_200--Hb_000139_140 Hb_000963_200 Hb_000963_200 Hb_029584_090--Hb_000963_200 Hb_032631_050 Hb_032631_050 Hb_029584_090--Hb_032631_050 Hb_000421_270 Hb_000421_270 Hb_029584_090--Hb_000421_270 Hb_002025_350 Hb_002025_350 Hb_029584_090--Hb_002025_350 Hb_000220_110 Hb_000220_110 Hb_000139_140--Hb_000220_110 Hb_003227_010 Hb_003227_010 Hb_000139_140--Hb_003227_010 Hb_001014_190 Hb_001014_190 Hb_000139_140--Hb_001014_190 Hb_000009_140 Hb_000009_140 Hb_000139_140--Hb_000009_140 Hb_000139_140--Hb_009646_010 Hb_003607_060--Hb_005181_180 Hb_000702_060 Hb_000702_060 Hb_003607_060--Hb_000702_060 Hb_003607_060--Hb_001341_200 Hb_003607_060--Hb_000139_140 Hb_003607_060--Hb_000009_140 Hb_004586_240 Hb_004586_240 Hb_003607_060--Hb_004586_240 Hb_005181_180--Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_005181_180--Hb_000684_360 Hb_000793_040 Hb_000793_040 Hb_005181_180--Hb_000793_040 Hb_001900_060 Hb_001900_060 Hb_005181_180--Hb_001900_060 Hb_002026_080--Hb_000793_040 Hb_001486_060 Hb_001486_060 Hb_002026_080--Hb_001486_060 Hb_000834_040 Hb_000834_040 Hb_002026_080--Hb_000834_040 Hb_000818_080 Hb_000818_080 Hb_002026_080--Hb_000818_080 Hb_002026_080--Hb_000702_060 Hb_001493_020 Hb_001493_020 Hb_002026_080--Hb_001493_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0671543 1.44106 1.04704 1.73967 0.139238 0.165615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.307295 0.221629 0.685487 3.16992 0.509144

CAGE analysis