Hb_004502_050

Information

Type -
Description -
Location Contig4502: 17663-32112
Sequence    

Annotation

kegg
ID pop:POPTR_1488s00200g
description hypothetical protein
nr
ID XP_006387223.1
description hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DVP9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1488s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43171: 9871-50195 , PASA_asmbl_43172: 9871-27662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004502_050 0.0 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
2 Hb_028639_050 0.1555287533 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]
3 Hb_011016_090 0.1660579813 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
4 Hb_005305_060 0.1667156675 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
5 Hb_003398_060 0.1670310171 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_027445_060 0.1699853414 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
7 Hb_004117_180 0.1707617124 - - -
8 Hb_115919_010 0.1773861354 - - unknown [Lotus japonicus]
9 Hb_003507_040 0.1779075245 - - hypothetical protein RCOM_1685970 [Ricinus communis]
10 Hb_001095_060 0.1814607489 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
11 Hb_000107_140 0.1829418827 - - -
12 Hb_120221_010 0.184161043 - - -
13 Hb_001488_110 0.1858947764 - - -
14 Hb_000320_320 0.1869620464 - - hypothetical protein POPTR_0004s01360g [Populus trichocarpa]
15 Hb_000122_030 0.187873562 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
16 Hb_011174_010 0.1883165691 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
17 Hb_023675_010 0.1888943243 - - -
18 Hb_000101_090 0.189039272 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
19 Hb_000048_090 0.1903272708 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
20 Hb_000329_770 0.1905419544 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004502_050 Hb_004502_050 Hb_028639_050 Hb_028639_050 Hb_004502_050--Hb_028639_050 Hb_011016_090 Hb_011016_090 Hb_004502_050--Hb_011016_090 Hb_005305_060 Hb_005305_060 Hb_004502_050--Hb_005305_060 Hb_003398_060 Hb_003398_060 Hb_004502_050--Hb_003398_060 Hb_027445_060 Hb_027445_060 Hb_004502_050--Hb_027445_060 Hb_004117_180 Hb_004117_180 Hb_004502_050--Hb_004117_180 Hb_000329_770 Hb_000329_770 Hb_028639_050--Hb_000329_770 Hb_000453_260 Hb_000453_260 Hb_028639_050--Hb_000453_260 Hb_028639_050--Hb_005305_060 Hb_002197_030 Hb_002197_030 Hb_028639_050--Hb_002197_030 Hb_013405_130 Hb_013405_130 Hb_028639_050--Hb_013405_130 Hb_000189_530 Hb_000189_530 Hb_011016_090--Hb_000189_530 Hb_000175_400 Hb_000175_400 Hb_011016_090--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_011016_090--Hb_000193_350 Hb_002259_030 Hb_002259_030 Hb_011016_090--Hb_002259_030 Hb_004453_150 Hb_004453_150 Hb_011016_090--Hb_004453_150 Hb_000032_540 Hb_000032_540 Hb_011016_090--Hb_000032_540 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_005305_060--Hb_000329_770 Hb_005305_060--Hb_027445_060 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_115919_010 Hb_115919_010 Hb_005305_060--Hb_115919_010 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010 Hb_001248_020 Hb_001248_020 Hb_003398_060--Hb_001248_020 Hb_036369_010 Hb_036369_010 Hb_003398_060--Hb_036369_010 Hb_003453_010 Hb_003453_010 Hb_003398_060--Hb_003453_010 Hb_000984_190 Hb_000984_190 Hb_003398_060--Hb_000984_190 Hb_017895_050 Hb_017895_050 Hb_003398_060--Hb_017895_050 Hb_025246_010 Hb_025246_010 Hb_003398_060--Hb_025246_010 Hb_121236_010 Hb_121236_010 Hb_027445_060--Hb_121236_010 Hb_027445_060--Hb_115919_010 Hb_068946_010 Hb_068946_010 Hb_027445_060--Hb_068946_010 Hb_001095_060 Hb_001095_060 Hb_027445_060--Hb_001095_060 Hb_003813_100 Hb_003813_100 Hb_027445_060--Hb_003813_100 Hb_004117_180--Hb_000193_350 Hb_004117_180--Hb_011016_090 Hb_011174_010 Hb_011174_010 Hb_004117_180--Hb_011174_010 Hb_000101_090 Hb_000101_090 Hb_004117_180--Hb_000101_090 Hb_102156_010 Hb_102156_010 Hb_004117_180--Hb_102156_010 Hb_002272_260 Hb_002272_260 Hb_004117_180--Hb_002272_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16194 0.338371 0.494863 0.771686 2.97002 13.5307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.35621 4.21261 0.882967 0.554114 0.139692

CAGE analysis