Hb_004511_060

Information

Type -
Description -
Location Contig4511: 15654-28901
Sequence    

Annotation

kegg
ID pmum:103328625
description uncharacterized LOC103328625
nr
ID XP_008229249.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
swissprot
ID P92516
description Uncharacterized mitochondrial protein AtMg00750 OS=Arabidopsis thaliana GN=AtMg00750 PE=4 SV=1
trembl
ID A5AWA9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002895 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein nynrin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004511_060 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
2 Hb_093912_010 0.0473528854 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_113541_010 0.0777892804 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
4 Hb_007970_040 0.0802111054 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
5 Hb_162086_010 0.1791661662 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
6 Hb_000976_200 0.2054141777 - - -
7 Hb_111854_010 0.2108211952 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_000340_540 0.2188047412 - - PREDICTED: peroxidase 39-like [Jatropha curcas]
9 Hb_000474_020 0.2215856951 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_003683_100 0.2215860658 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_007924_040 0.221590967 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
12 Hb_001072_060 0.221687798 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
13 Hb_035484_010 0.22550288 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
14 Hb_008918_030 0.2394170898 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_000031_200 0.2446634985 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
16 Hb_000060_070 0.2453648318 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
17 Hb_029154_020 0.2536574178 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_029793_020 0.2537152334 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_002223_010 0.2539091324 - - hypothetical protein VITISV_009489 [Vitis vinifera]
20 Hb_004337_010 0.2539161017 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_004511_060 Hb_004511_060 Hb_093912_010 Hb_093912_010 Hb_004511_060--Hb_093912_010 Hb_113541_010 Hb_113541_010 Hb_004511_060--Hb_113541_010 Hb_007970_040 Hb_007970_040 Hb_004511_060--Hb_007970_040 Hb_162086_010 Hb_162086_010 Hb_004511_060--Hb_162086_010 Hb_000976_200 Hb_000976_200 Hb_004511_060--Hb_000976_200 Hb_111854_010 Hb_111854_010 Hb_004511_060--Hb_111854_010 Hb_093912_010--Hb_007970_040 Hb_093912_010--Hb_113541_010 Hb_093912_010--Hb_162086_010 Hb_000474_020 Hb_000474_020 Hb_093912_010--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_093912_010--Hb_003683_100 Hb_113541_010--Hb_007970_040 Hb_035484_010 Hb_035484_010 Hb_113541_010--Hb_035484_010 Hb_001072_060 Hb_001072_060 Hb_113541_010--Hb_001072_060 Hb_029154_020 Hb_029154_020 Hb_113541_010--Hb_029154_020 Hb_007970_040--Hb_000474_020 Hb_007970_040--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_007970_040--Hb_007924_040 Hb_000060_070 Hb_000060_070 Hb_162086_010--Hb_000060_070 Hb_007575_010 Hb_007575_010 Hb_162086_010--Hb_007575_010 Hb_162086_010--Hb_007970_040 Hb_000031_200 Hb_000031_200 Hb_162086_010--Hb_000031_200 Hb_000976_200--Hb_113541_010 Hb_000340_540 Hb_000340_540 Hb_000976_200--Hb_000340_540 Hb_000976_200--Hb_111854_010 Hb_000976_200--Hb_162086_010 Hb_003927_060 Hb_003927_060 Hb_000976_200--Hb_003927_060 Hb_008008_020 Hb_008008_020 Hb_111854_010--Hb_008008_020 Hb_111854_010--Hb_093912_010 Hb_111854_010--Hb_113541_010 Hb_111854_010--Hb_007970_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00453877 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.008196 0 0 0.0351448

CAGE analysis