Hb_004512_020

Information

Type -
Description -
Location Contig4512: 24775-28848
Sequence    

Annotation

kegg
ID tcc:TCM_038480
description Tetratricopeptide repeat (TPR)-like superfamily protein
nr
ID XP_012071594.1
description PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
swissprot
ID Q99614
description Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1
trembl
ID A0A067KRM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43192: 24742-28751 , PASA_asmbl_43194: 26052-26907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004512_020 0.0 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
2 Hb_001427_170 0.0815041928 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
3 Hb_012132_030 0.0932876395 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
4 Hb_000946_120 0.0994360265 - - DNA binding protein, putative [Ricinus communis]
5 Hb_031527_100 0.1022481366 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000365_140 0.1105382604 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
7 Hb_000422_140 0.1106552838 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
8 Hb_001754_240 0.1110742515 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
9 Hb_002367_130 0.1119651953 - - UNC-50 family protein isoform 1 [Theobroma cacao]
10 Hb_001541_260 0.1139734312 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
11 Hb_025669_020 0.1161635293 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011344_010 0.1175627386 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
13 Hb_003788_050 0.1178000988 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
14 Hb_003751_060 0.1183884752 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
15 Hb_001083_030 0.1185062211 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
16 Hb_000755_080 0.1187366557 - - hypothetical protein RCOM_1016710 [Ricinus communis]
17 Hb_003097_190 0.1188180055 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
18 Hb_000028_040 0.1209338922 - - PREDICTED: prostaglandin E synthase 2-like [Jatropha curcas]
19 Hb_004656_060 0.1237425546 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
20 Hb_007304_110 0.1237441765 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_004512_020 Hb_004512_020 Hb_001427_170 Hb_001427_170 Hb_004512_020--Hb_001427_170 Hb_012132_030 Hb_012132_030 Hb_004512_020--Hb_012132_030 Hb_000946_120 Hb_000946_120 Hb_004512_020--Hb_000946_120 Hb_031527_100 Hb_031527_100 Hb_004512_020--Hb_031527_100 Hb_000365_140 Hb_000365_140 Hb_004512_020--Hb_000365_140 Hb_000422_140 Hb_000422_140 Hb_004512_020--Hb_000422_140 Hb_011344_010 Hb_011344_010 Hb_001427_170--Hb_011344_010 Hb_182026_010 Hb_182026_010 Hb_001427_170--Hb_182026_010 Hb_005928_060 Hb_005928_060 Hb_001427_170--Hb_005928_060 Hb_001427_170--Hb_012132_030 Hb_017168_010 Hb_017168_010 Hb_001427_170--Hb_017168_010 Hb_012132_030--Hb_000946_120 Hb_012132_030--Hb_017168_010 Hb_010222_080 Hb_010222_080 Hb_012132_030--Hb_010222_080 Hb_001541_260 Hb_001541_260 Hb_012132_030--Hb_001541_260 Hb_144787_030 Hb_144787_030 Hb_012132_030--Hb_144787_030 Hb_001136_100 Hb_001136_100 Hb_012132_030--Hb_001136_100 Hb_000946_120--Hb_144787_030 Hb_000032_490 Hb_000032_490 Hb_000946_120--Hb_000032_490 Hb_000946_120--Hb_000365_140 Hb_000946_120--Hb_000422_140 Hb_000946_120--Hb_001541_260 Hb_004837_190 Hb_004837_190 Hb_031527_100--Hb_004837_190 Hb_005503_030 Hb_005503_030 Hb_031527_100--Hb_005503_030 Hb_054865_100 Hb_054865_100 Hb_031527_100--Hb_054865_100 Hb_008887_050 Hb_008887_050 Hb_031527_100--Hb_008887_050 Hb_000327_120 Hb_000327_120 Hb_031527_100--Hb_000327_120 Hb_000477_030 Hb_000477_030 Hb_031527_100--Hb_000477_030 Hb_002477_130 Hb_002477_130 Hb_000365_140--Hb_002477_130 Hb_000365_140--Hb_000032_490 Hb_000365_140--Hb_000422_140 Hb_000640_220 Hb_000640_220 Hb_000365_140--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000365_140--Hb_005895_040 Hb_000422_140--Hb_005895_040 Hb_000422_140--Hb_144787_030 Hb_004656_060 Hb_004656_060 Hb_000422_140--Hb_004656_060 Hb_000422_140--Hb_002477_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.9452 29.3809 36.0162 22.0901 149.423 57.3524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.3227 51.0811 50.8826 22.4837 22.46

CAGE analysis