Hb_004517_020

Information

Type -
Description -
Location Contig4517: 18736-34783
Sequence    

Annotation

kegg
ID rcu:RCOM_1039430
description sentrin/sumo-specific protease, putative
nr
ID XP_012068004.1
description PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
swissprot
ID Q8L7S0
description Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=1 SV=3
trembl
ID A0A067L2K9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15885 PE=4 SV=1
Gene Ontology
ID GO:0008234
description probable ubiquitin-like-specific protease 2b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43198: 18826-18997 , PASA_asmbl_43199: 19357-30446 , PASA_asmbl_43200: 28999-29456 , PASA_asmbl_43204: 32508-32864 , PASA_asmbl_43205: 30979-34708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004517_020 0.0 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
2 Hb_000120_910 0.0404297067 - - plant ubiquilin, putative [Ricinus communis]
3 Hb_001723_010 0.0413133806 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
4 Hb_000977_300 0.0420468157 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
5 Hb_000008_240 0.0489669573 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000373_170 0.0506398689 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
7 Hb_000110_350 0.0554104619 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
8 Hb_002768_050 0.058972157 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
9 Hb_000189_630 0.0613355854 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
10 Hb_000529_060 0.0620609042 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
11 Hb_000340_030 0.0629230819 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
12 Hb_031641_010 0.0634141214 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000996_020 0.063792013 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
14 Hb_000684_510 0.0651481711 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
15 Hb_000445_060 0.065420166 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
16 Hb_000949_020 0.0658627906 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
17 Hb_170077_010 0.06633335 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
18 Hb_004429_010 0.0684123406 - - calcineurin-like phosphoesterase [Manihot esculenta]
19 Hb_005568_040 0.0693378776 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
20 Hb_005834_040 0.0694606496 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004517_020 Hb_004517_020 Hb_000120_910 Hb_000120_910 Hb_004517_020--Hb_000120_910 Hb_001723_010 Hb_001723_010 Hb_004517_020--Hb_001723_010 Hb_000977_300 Hb_000977_300 Hb_004517_020--Hb_000977_300 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_000373_170 Hb_000373_170 Hb_004517_020--Hb_000373_170 Hb_000110_350 Hb_000110_350 Hb_004517_020--Hb_000110_350 Hb_000120_910--Hb_000977_300 Hb_027654_020 Hb_027654_020 Hb_000120_910--Hb_027654_020 Hb_000949_020 Hb_000949_020 Hb_000120_910--Hb_000949_020 Hb_000809_160 Hb_000809_160 Hb_000120_910--Hb_000809_160 Hb_000120_910--Hb_001723_010 Hb_000340_030 Hb_000340_030 Hb_001723_010--Hb_000340_030 Hb_003711_010 Hb_003711_010 Hb_001723_010--Hb_003711_010 Hb_000139_320 Hb_000139_320 Hb_001723_010--Hb_000139_320 Hb_001723_010--Hb_000373_170 Hb_000529_060 Hb_000529_060 Hb_000977_300--Hb_000529_060 Hb_001171_030 Hb_001171_030 Hb_000977_300--Hb_001171_030 Hb_000189_630 Hb_000189_630 Hb_000977_300--Hb_000189_630 Hb_000977_300--Hb_000110_350 Hb_000331_580 Hb_000331_580 Hb_000008_240--Hb_000331_580 Hb_002768_050 Hb_002768_050 Hb_000008_240--Hb_002768_050 Hb_005568_040 Hb_005568_040 Hb_000008_240--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000008_240--Hb_002007_110 Hb_000479_240 Hb_000479_240 Hb_000008_240--Hb_000479_240 Hb_000996_020 Hb_000996_020 Hb_000373_170--Hb_000996_020 Hb_000445_060 Hb_000445_060 Hb_000373_170--Hb_000445_060 Hb_000661_120 Hb_000661_120 Hb_000373_170--Hb_000661_120 Hb_000373_170--Hb_002768_050 Hb_170077_010 Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000110_350--Hb_003929_210 Hb_000110_350--Hb_002768_050 Hb_000110_350--Hb_000445_060 Hb_000110_350--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3938 27.0577 19.4032 16.8862 12.6512 12.4285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.92679 7.38599 10.1359 16.9546 13.8825

CAGE analysis