Hb_004524_070

Information

Type -
Description -
Location Contig4524: 23826-29765
Sequence    

Annotation

kegg
ID pop:POPTR_0019s00600g
description POPTRDRAFT_913415; hypothetical protein
nr
ID XP_012072929.1
description PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KME4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06895 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43216: 23288-23493 , PASA_asmbl_43217: 27460-27929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004524_070 0.0 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
2 Hb_099990_030 0.2195837685 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_000589_370 0.2309553019 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
4 Hb_113823_010 0.2464875267 - - -
5 Hb_167508_010 0.2505440044 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
6 Hb_002234_230 0.2658491156 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
7 Hb_003292_060 0.2661677539 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
8 Hb_004524_060 0.2666890006 - - hypothetical protein VITISV_039334 [Vitis vinifera]
9 Hb_004117_250 0.2680932936 - - PREDICTED: expansin-A8-like [Populus euphratica]
10 Hb_000003_140 0.2762113706 - - hypothetical protein glysoja_047034, partial [Glycine soja]
11 Hb_000123_100 0.2860700987 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
12 Hb_000787_010 0.2947226828 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
13 Hb_021650_050 0.3026643091 - - hypothetical protein RCOM_0852210 [Ricinus communis]
14 Hb_004800_050 0.3092692078 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
15 Hb_004522_020 0.3140031487 - - PREDICTED: uncharacterized protein LOC105646836 [Jatropha curcas]
16 Hb_003159_100 0.3144779839 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
17 Hb_028848_030 0.3270857492 - - -
18 Hb_061466_020 0.3347050476 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
19 Hb_163508_010 0.3371763611 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
20 Hb_028639_040 0.3387067229 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]

Gene co-expression network

sample Hb_004524_070 Hb_004524_070 Hb_099990_030 Hb_099990_030 Hb_004524_070--Hb_099990_030 Hb_000589_370 Hb_000589_370 Hb_004524_070--Hb_000589_370 Hb_113823_010 Hb_113823_010 Hb_004524_070--Hb_113823_010 Hb_167508_010 Hb_167508_010 Hb_004524_070--Hb_167508_010 Hb_002234_230 Hb_002234_230 Hb_004524_070--Hb_002234_230 Hb_003292_060 Hb_003292_060 Hb_004524_070--Hb_003292_060 Hb_000787_010 Hb_000787_010 Hb_099990_030--Hb_000787_010 Hb_004968_010 Hb_004968_010 Hb_099990_030--Hb_004968_010 Hb_099990_030--Hb_167508_010 Hb_061466_020 Hb_061466_020 Hb_099990_030--Hb_061466_020 Hb_161023_010 Hb_161023_010 Hb_099990_030--Hb_161023_010 Hb_000589_370--Hb_003292_060 Hb_000589_370--Hb_002234_230 Hb_004117_250 Hb_004117_250 Hb_000589_370--Hb_004117_250 Hb_004524_060 Hb_004524_060 Hb_000589_370--Hb_004524_060 Hb_021650_050 Hb_021650_050 Hb_000589_370--Hb_021650_050 Hb_010979_010 Hb_010979_010 Hb_113823_010--Hb_010979_010 Hb_001214_170 Hb_001214_170 Hb_113823_010--Hb_001214_170 Hb_000123_100 Hb_000123_100 Hb_113823_010--Hb_000123_100 Hb_000146_060 Hb_000146_060 Hb_113823_010--Hb_000146_060 Hb_113823_010--Hb_099990_030 Hb_167508_010--Hb_061466_020 Hb_000003_140 Hb_000003_140 Hb_167508_010--Hb_000003_140 Hb_167508_010--Hb_001214_170 Hb_129459_010 Hb_129459_010 Hb_167508_010--Hb_129459_010 Hb_000189_430 Hb_000189_430 Hb_167508_010--Hb_000189_430 Hb_002234_230--Hb_003292_060 Hb_001124_030 Hb_001124_030 Hb_002234_230--Hb_001124_030 Hb_002234_230--Hb_021650_050 Hb_002234_230--Hb_004117_250 Hb_003292_060--Hb_001124_030 Hb_003292_060--Hb_004117_250 Hb_003292_060--Hb_004524_060 Hb_003292_060--Hb_000787_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0701011 0.0563171 0.109983 0 0.0261864 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis