Hb_004525_100

Information

Type -
Description -
Location Contig4525: 62403-71345
Sequence    

Annotation

kegg
ID tcc:TCM_001457
description hypothetical protein
nr
ID KDP29843.1
description hypothetical protein JCGZ_18418 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K479
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18418 PE=4 SV=1
Gene Ontology
ID GO:0016023
description hypothetical protein JCGZ_18418

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43231: 62518-71006 , PASA_asmbl_43232: 62518-70996 , PASA_asmbl_43233: 62480-71072 , PASA_asmbl_43234: 63432-63644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004525_100 0.0 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
2 Hb_000088_200 0.058014754 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_000236_280 0.0754605926 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
4 Hb_000617_220 0.0770707189 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_004044_020 0.0774169015 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
6 Hb_000976_270 0.0786117959 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
7 Hb_003126_040 0.079396876 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000209_090 0.0836258658 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
9 Hb_000072_140 0.0838116886 - - -
10 Hb_178968_100 0.0870801821 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
11 Hb_001663_110 0.0899835874 - - RNA binding protein, putative [Ricinus communis]
12 Hb_003091_010 0.0976604994 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
13 Hb_000290_020 0.0981458222 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
14 Hb_000058_040 0.0981591758 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
15 Hb_000175_390 0.0991081302 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
16 Hb_000529_080 0.0996394947 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
17 Hb_007534_040 0.1006042718 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
18 Hb_006623_020 0.1022472868 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
19 Hb_000205_120 0.1030279035 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
20 Hb_004450_060 0.1042189817 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004525_100 Hb_004525_100 Hb_000088_200 Hb_000088_200 Hb_004525_100--Hb_000088_200 Hb_000236_280 Hb_000236_280 Hb_004525_100--Hb_000236_280 Hb_000617_220 Hb_000617_220 Hb_004525_100--Hb_000617_220 Hb_004044_020 Hb_004044_020 Hb_004525_100--Hb_004044_020 Hb_000976_270 Hb_000976_270 Hb_004525_100--Hb_000976_270 Hb_003126_040 Hb_003126_040 Hb_004525_100--Hb_003126_040 Hb_000088_200--Hb_004044_020 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100 Hb_000175_390 Hb_000175_390 Hb_000088_200--Hb_000175_390 Hb_004241_070 Hb_004241_070 Hb_000236_280--Hb_004241_070 Hb_000104_080 Hb_000104_080 Hb_000236_280--Hb_000104_080 Hb_073171_080 Hb_073171_080 Hb_000236_280--Hb_073171_080 Hb_000236_280--Hb_004044_020 Hb_003091_010 Hb_003091_010 Hb_000617_220--Hb_003091_010 Hb_011848_010 Hb_011848_010 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_000684_420 Hb_000684_420 Hb_004044_020--Hb_000684_420 Hb_031939_010 Hb_031939_010 Hb_004044_020--Hb_031939_010 Hb_012305_070 Hb_012305_070 Hb_004044_020--Hb_012305_070 Hb_001663_110 Hb_001663_110 Hb_000976_270--Hb_001663_110 Hb_000205_120 Hb_000205_120 Hb_000976_270--Hb_000205_120 Hb_000209_090 Hb_000209_090 Hb_000976_270--Hb_000209_090 Hb_004447_030 Hb_004447_030 Hb_000976_270--Hb_004447_030 Hb_001956_120 Hb_001956_120 Hb_000976_270--Hb_001956_120 Hb_003126_040--Hb_000290_020 Hb_012675_090 Hb_012675_090 Hb_003126_040--Hb_012675_090 Hb_003126_040--Hb_004044_020 Hb_003086_070 Hb_003086_070 Hb_003126_040--Hb_003086_070 Hb_003126_040--Hb_000088_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3141 2.23852 3.18846 1.92082 10.6734 8.79733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73521 5.92567 1.86791 1.87566 1.86591

CAGE analysis