Hb_004529_010

Information

Type -
Description -
Location Contig4529: 1278-3635
Sequence    

Annotation

kegg
ID rcu:RCOM_0381660
description DNA binding protein, putative
nr
ID KDP43106.1
description hypothetical protein JCGZ_27055 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3R2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27055 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004529_010 0.0 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
2 Hb_155215_030 0.0705643188 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_000853_140 0.1258452894 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
4 Hb_001935_200 0.1351752776 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
5 Hb_008406_170 0.1439767397 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000953_110 0.1473762902 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
7 Hb_004158_040 0.1546531517 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
8 Hb_002085_060 0.1610455385 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003645_040 0.1626034615 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
10 Hb_003638_020 0.1654342765 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
11 Hb_003788_030 0.1665704762 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_001722_110 0.1666678191 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
13 Hb_029665_010 0.1703547275 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
14 Hb_000339_060 0.1704804234 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
15 Hb_007545_220 0.1710623293 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
16 Hb_004449_100 0.1712909698 - - -
17 Hb_000684_190 0.1718207219 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
18 Hb_005588_050 0.1724382761 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010217_020 0.1734012444 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
20 Hb_000046_390 0.174182202 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]

Gene co-expression network

sample Hb_004529_010 Hb_004529_010 Hb_155215_030 Hb_155215_030 Hb_004529_010--Hb_155215_030 Hb_000853_140 Hb_000853_140 Hb_004529_010--Hb_000853_140 Hb_001935_200 Hb_001935_200 Hb_004529_010--Hb_001935_200 Hb_008406_170 Hb_008406_170 Hb_004529_010--Hb_008406_170 Hb_000953_110 Hb_000953_110 Hb_004529_010--Hb_000953_110 Hb_004158_040 Hb_004158_040 Hb_004529_010--Hb_004158_040 Hb_155215_030--Hb_001935_200 Hb_003788_030 Hb_003788_030 Hb_155215_030--Hb_003788_030 Hb_004449_100 Hb_004449_100 Hb_155215_030--Hb_004449_100 Hb_000684_190 Hb_000684_190 Hb_155215_030--Hb_000684_190 Hb_003645_040 Hb_003645_040 Hb_155215_030--Hb_003645_040 Hb_000853_140--Hb_008406_170 Hb_000853_140--Hb_000953_110 Hb_032260_040 Hb_032260_040 Hb_000853_140--Hb_032260_040 Hb_000853_140--Hb_004158_040 Hb_003711_050 Hb_003711_050 Hb_000853_140--Hb_003711_050 Hb_007545_220 Hb_007545_220 Hb_000853_140--Hb_007545_220 Hb_001935_200--Hb_000684_190 Hb_001935_200--Hb_003788_030 Hb_002785_020 Hb_002785_020 Hb_001935_200--Hb_002785_020 Hb_000645_230 Hb_000645_230 Hb_001935_200--Hb_000645_230 Hb_000422_090 Hb_000422_090 Hb_001935_200--Hb_000422_090 Hb_008406_170--Hb_032260_040 Hb_001269_430 Hb_001269_430 Hb_008406_170--Hb_001269_430 Hb_002835_120 Hb_002835_120 Hb_008406_170--Hb_002835_120 Hb_012217_010 Hb_012217_010 Hb_008406_170--Hb_012217_010 Hb_008406_170--Hb_003711_050 Hb_000953_110--Hb_007545_220 Hb_010217_020 Hb_010217_020 Hb_000953_110--Hb_010217_020 Hb_000197_260 Hb_000197_260 Hb_000953_110--Hb_000197_260 Hb_000953_110--Hb_004158_040 Hb_005183_070 Hb_005183_070 Hb_000953_110--Hb_005183_070 Hb_001579_160 Hb_001579_160 Hb_004158_040--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_004158_040--Hb_001722_110 Hb_005588_050 Hb_005588_050 Hb_004158_040--Hb_005588_050 Hb_001454_350 Hb_001454_350 Hb_004158_040--Hb_001454_350 Hb_004158_040--Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_004158_040--Hb_006618_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0667587 0 0.484328 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.140539

CAGE analysis