Hb_004530_010

Information

Type -
Description -
Location Contig4530: 2339-4723
Sequence    

Annotation

kegg
ID bvg:104898079
description uncharacterized LOC104898079
nr
ID XP_010683389.1
description PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q2AA50
description Retrotransposon gag protein OS=Asparagus officinalis GN=19.t00014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004530_010 0.0 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
2 Hb_102761_010 0.0889341438 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
3 Hb_044380_010 0.0968613249 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
4 Hb_010721_040 0.106211358 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
5 Hb_000997_370 0.1193454045 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
6 Hb_003714_030 0.1254529586 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
7 Hb_001248_140 0.1257588218 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_007590_030 0.1291039459 - - PREDICTED: iridoid synthase [Jatropha curcas]
9 Hb_005092_070 0.1338600014 - - Oligopeptide transporter, putative [Ricinus communis]
10 Hb_008714_030 0.1436457902 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
11 Hb_000914_010 0.1473119308 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
12 Hb_000415_080 0.1493692917 - - -
13 Hb_094484_010 0.1498315539 - - kinase, putative [Ricinus communis]
14 Hb_051410_010 0.1502424489 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
15 Hb_002081_140 0.1532712294 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000254_080 0.1540888356 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
17 Hb_000343_090 0.1561365523 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
18 Hb_151870_010 0.1564014625 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
19 Hb_014510_030 0.1658397229 - - hypothetical protein VITISV_027576 [Vitis vinifera]
20 Hb_000029_220 0.1676894036 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]

Gene co-expression network

sample Hb_004530_010 Hb_004530_010 Hb_102761_010 Hb_102761_010 Hb_004530_010--Hb_102761_010 Hb_044380_010 Hb_044380_010 Hb_004530_010--Hb_044380_010 Hb_010721_040 Hb_010721_040 Hb_004530_010--Hb_010721_040 Hb_000997_370 Hb_000997_370 Hb_004530_010--Hb_000997_370 Hb_003714_030 Hb_003714_030 Hb_004530_010--Hb_003714_030 Hb_001248_140 Hb_001248_140 Hb_004530_010--Hb_001248_140 Hb_014510_030 Hb_014510_030 Hb_102761_010--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_102761_010--Hb_000415_080 Hb_004896_030 Hb_004896_030 Hb_102761_010--Hb_004896_030 Hb_102761_010--Hb_010721_040 Hb_000627_110 Hb_000627_110 Hb_102761_010--Hb_000627_110 Hb_044380_010--Hb_003714_030 Hb_186765_010 Hb_186765_010 Hb_044380_010--Hb_186765_010 Hb_001396_130 Hb_001396_130 Hb_044380_010--Hb_001396_130 Hb_011519_040 Hb_011519_040 Hb_044380_010--Hb_011519_040 Hb_044380_010--Hb_001248_140 Hb_094484_010 Hb_094484_010 Hb_010721_040--Hb_094484_010 Hb_000343_090 Hb_000343_090 Hb_010721_040--Hb_000343_090 Hb_025161_030 Hb_025161_030 Hb_010721_040--Hb_025161_030 Hb_008714_030 Hb_008714_030 Hb_010721_040--Hb_008714_030 Hb_002081_140 Hb_002081_140 Hb_000997_370--Hb_002081_140 Hb_000254_080 Hb_000254_080 Hb_000997_370--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_000997_370--Hb_002119_150 Hb_004837_080 Hb_004837_080 Hb_000997_370--Hb_004837_080 Hb_000538_110 Hb_000538_110 Hb_000997_370--Hb_000538_110 Hb_029386_010 Hb_029386_010 Hb_000997_370--Hb_029386_010 Hb_000207_240 Hb_000207_240 Hb_003714_030--Hb_000207_240 Hb_001097_140 Hb_001097_140 Hb_003714_030--Hb_001097_140 Hb_003714_030--Hb_001248_140 Hb_003714_030--Hb_001396_130 Hb_001248_140--Hb_102761_010 Hb_000054_130 Hb_000054_130 Hb_001248_140--Hb_000054_130 Hb_001248_140--Hb_010721_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00759692 0.00719723 0.0979818 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0327248 0.243995

CAGE analysis