Hb_004531_010

Information

Type -
Description -
Location Contig4531: 3136-5157
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019288mg
description hypothetical protein
nr
ID XP_012073473.1
description PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID F6HYC4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03920 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at3g12360-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43293: 3828-4483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_010 0.0 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
2 Hb_000347_370 0.106743018 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
3 Hb_004267_070 0.1068357186 - - latex allene oxide synthase [Hevea brasiliensis]
4 Hb_007305_040 0.1070616513 - - Nodulin-26, putative [Ricinus communis]
5 Hb_007383_050 0.108134608 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
6 Hb_001411_150 0.1111664454 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
7 Hb_000210_150 0.1140162514 - - PREDICTED: protein YLS9-like [Jatropha curcas]
8 Hb_000181_080 0.116745464 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
9 Hb_012702_010 0.1260672812 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
10 Hb_001168_100 0.1266381621 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
11 Hb_002042_190 0.1298003142 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
12 Hb_000172_300 0.1305530344 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
13 Hb_029238_020 0.134928638 - - PREDICTED: expansin-like A1 [Jatropha curcas]
14 Hb_009189_010 0.1382658466 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
15 Hb_025477_020 0.1405828676 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
16 Hb_024857_010 0.141408613 - - glutaredoxin 2.1 [Hevea brasiliensis]
17 Hb_002236_020 0.1427723292 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
18 Hb_011928_030 0.1429953628 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
19 Hb_000625_040 0.1447561325 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
20 Hb_004122_020 0.1451635432 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]

Gene co-expression network

sample Hb_004531_010 Hb_004531_010 Hb_000347_370 Hb_000347_370 Hb_004531_010--Hb_000347_370 Hb_004267_070 Hb_004267_070 Hb_004531_010--Hb_004267_070 Hb_007305_040 Hb_007305_040 Hb_004531_010--Hb_007305_040 Hb_007383_050 Hb_007383_050 Hb_004531_010--Hb_007383_050 Hb_001411_150 Hb_001411_150 Hb_004531_010--Hb_001411_150 Hb_000210_150 Hb_000210_150 Hb_004531_010--Hb_000210_150 Hb_001168_100 Hb_001168_100 Hb_000347_370--Hb_001168_100 Hb_000347_370--Hb_004267_070 Hb_000347_370--Hb_007383_050 Hb_011928_030 Hb_011928_030 Hb_000347_370--Hb_011928_030 Hb_000347_370--Hb_007305_040 Hb_133646_010 Hb_133646_010 Hb_000347_370--Hb_133646_010 Hb_004267_070--Hb_001168_100 Hb_004267_070--Hb_007383_050 Hb_004267_070--Hb_001411_150 Hb_004267_070--Hb_000210_150 Hb_089140_020 Hb_089140_020 Hb_004267_070--Hb_089140_020 Hb_000625_040 Hb_000625_040 Hb_007305_040--Hb_000625_040 Hb_002236_020 Hb_002236_020 Hb_007305_040--Hb_002236_020 Hb_024857_010 Hb_024857_010 Hb_007305_040--Hb_024857_010 Hb_000260_130 Hb_000260_130 Hb_007305_040--Hb_000260_130 Hb_007383_050--Hb_001411_150 Hb_007383_050--Hb_001168_100 Hb_009189_010 Hb_009189_010 Hb_007383_050--Hb_009189_010 Hb_007383_050--Hb_089140_020 Hb_001411_150--Hb_009189_010 Hb_001289_030 Hb_001289_030 Hb_001411_150--Hb_001289_030 Hb_001411_150--Hb_001168_100 Hb_001411_150--Hb_089140_020 Hb_025477_020 Hb_025477_020 Hb_000210_150--Hb_025477_020 Hb_035391_010 Hb_035391_010 Hb_000210_150--Hb_035391_010 Hb_158123_010 Hb_158123_010 Hb_000210_150--Hb_158123_010 Hb_027214_060 Hb_027214_060 Hb_000210_150--Hb_027214_060 Hb_000316_150 Hb_000316_150 Hb_000210_150--Hb_000316_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.8269 0.358045 0.853302 0.0123763 0.0121962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0221246 0.041706 0.344011 0.139362

CAGE analysis