Hb_004531_070

Information

Type -
Description -
Location Contig4531: 37845-41076
Sequence    

Annotation

kegg
ID rcu:RCOM_1491950
description Cytochrome c oxidase assembly protein COX19, putative
nr
ID XP_012073418.1
description PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
swissprot
ID A8E4L1
description Cytochrome c oxidase assembly protein COX19 OS=Bos taurus GN=COX19 PE=3 SV=1
trembl
ID B9RQH5
description Cytochrome c oxidase assembly protein COX19, putative OS=Ricinus communis GN=RCOM_1491950 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cytochrome c oxidase assembly protein cox19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43295: 38107-41100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_070 0.0 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
2 Hb_003069_010 0.0836061865 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
3 Hb_005186_050 0.0872709639 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
4 Hb_028841_030 0.0953321254 - - -
5 Hb_011013_010 0.1057297541 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
6 Hb_013405_060 0.1083506141 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
7 Hb_003607_150 0.1102767159 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
8 Hb_008112_040 0.1119038728 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
9 Hb_000362_200 0.1122051707 - - exonuclease family protein [Populus trichocarpa]
10 Hb_007441_210 0.1128708138 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
11 Hb_004934_030 0.1141762877 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
12 Hb_000661_140 0.1144907573 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
13 Hb_004096_090 0.1172755393 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
14 Hb_000003_600 0.1178113202 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
15 Hb_000000_360 0.1178693637 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
16 Hb_000853_430 0.1178764717 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
17 Hb_007154_020 0.1210435025 - - -
18 Hb_002820_110 0.1210468014 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
19 Hb_004785_190 0.1212923103 - - PHD finger family protein [Populus trichocarpa]
20 Hb_002026_220 0.1219415854 - - Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004531_070 Hb_004531_070 Hb_003069_010 Hb_003069_010 Hb_004531_070--Hb_003069_010 Hb_005186_050 Hb_005186_050 Hb_004531_070--Hb_005186_050 Hb_028841_030 Hb_028841_030 Hb_004531_070--Hb_028841_030 Hb_011013_010 Hb_011013_010 Hb_004531_070--Hb_011013_010 Hb_013405_060 Hb_013405_060 Hb_004531_070--Hb_013405_060 Hb_003607_150 Hb_003607_150 Hb_004531_070--Hb_003607_150 Hb_003069_010--Hb_005186_050 Hb_010661_030 Hb_010661_030 Hb_003069_010--Hb_010661_030 Hb_003069_010--Hb_003607_150 Hb_012627_050 Hb_012627_050 Hb_003069_010--Hb_012627_050 Hb_007154_020 Hb_007154_020 Hb_003069_010--Hb_007154_020 Hb_005186_050--Hb_003607_150 Hb_005186_050--Hb_007154_020 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070 Hb_003363_110 Hb_003363_110 Hb_028841_030--Hb_003363_110 Hb_028841_030--Hb_005186_050 Hb_011381_060 Hb_011381_060 Hb_028841_030--Hb_011381_060 Hb_028841_030--Hb_003607_150 Hb_028841_030--Hb_007154_020 Hb_028841_030--Hb_003069_010 Hb_000661_140 Hb_000661_140 Hb_011013_010--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_011013_010--Hb_002639_150 Hb_012725_070 Hb_012725_070 Hb_011013_010--Hb_012725_070 Hb_005288_150 Hb_005288_150 Hb_011013_010--Hb_005288_150 Hb_001373_110 Hb_001373_110 Hb_011013_010--Hb_001373_110 Hb_007441_210 Hb_007441_210 Hb_013405_060--Hb_007441_210 Hb_008112_040 Hb_008112_040 Hb_013405_060--Hb_008112_040 Hb_013405_060--Hb_011381_060 Hb_013405_060--Hb_007154_020 Hb_002868_010 Hb_002868_010 Hb_013405_060--Hb_002868_010 Hb_013405_060--Hb_028841_030 Hb_003607_150--Hb_000251_070 Hb_002685_040 Hb_002685_040 Hb_003607_150--Hb_002685_040 Hb_003607_150--Hb_007154_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.584 8.43023 27.2697 7.64913 13.1201 23.0723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2739 31.7065 14.0176 5.90446 7.83125

CAGE analysis