Hb_004531_090

Information

Type -
Description -
Location Contig4531: 51747-55824
Sequence    

Annotation

kegg
ID rcu:RCOM_1491970
description hypothetical protein
nr
ID XP_012073413.1
description PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
swissprot
ID Q9C5H4
description VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana GN=At3g16270 PE=1 SV=1
trembl
ID A0A067KM25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06327 PE=4 SV=1
Gene Ontology
ID GO:0006886
description vhs domain-containing protein at3g16270

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43300: 49377-55612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_090 0.0 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
2 Hb_000779_040 0.0699493769 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
3 Hb_002025_140 0.0731020224 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
4 Hb_000291_120 0.0778548541 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
5 Hb_000211_090 0.0816135744 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
6 Hb_000573_040 0.0818264595 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
7 Hb_001034_020 0.0836559185 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
8 Hb_019871_020 0.0862843744 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
9 Hb_004032_350 0.0874497427 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
10 Hb_000173_370 0.0875622212 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
11 Hb_012760_200 0.0898809487 - - protein phsophatase-2a, putative [Ricinus communis]
12 Hb_000608_340 0.0925529432 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
13 Hb_000890_220 0.0928759735 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
14 Hb_101151_020 0.095706033 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000134_360 0.0968986278 - - PREDICTED: protein gar2 [Jatropha curcas]
16 Hb_003666_050 0.0970258996 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
17 Hb_174865_050 0.0983035726 - - PREDICTED: neuroguidin [Jatropha curcas]
18 Hb_009421_030 0.0986701195 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
19 Hb_000165_130 0.099384779 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
20 Hb_000088_180 0.0997884157 - - hypothetical protein JCGZ_11198 [Jatropha curcas]

Gene co-expression network

sample Hb_004531_090 Hb_004531_090 Hb_000779_040 Hb_000779_040 Hb_004531_090--Hb_000779_040 Hb_002025_140 Hb_002025_140 Hb_004531_090--Hb_002025_140 Hb_000291_120 Hb_000291_120 Hb_004531_090--Hb_000291_120 Hb_000211_090 Hb_000211_090 Hb_004531_090--Hb_000211_090 Hb_000573_040 Hb_000573_040 Hb_004531_090--Hb_000573_040 Hb_001034_020 Hb_001034_020 Hb_004531_090--Hb_001034_020 Hb_000890_220 Hb_000890_220 Hb_000779_040--Hb_000890_220 Hb_000779_040--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000792_110 Hb_000792_110 Hb_000779_040--Hb_000792_110 Hb_003673_020 Hb_003673_020 Hb_000779_040--Hb_003673_020 Hb_002025_140--Hb_000573_040 Hb_000165_130 Hb_000165_130 Hb_002025_140--Hb_000165_130 Hb_000173_370 Hb_000173_370 Hb_002025_140--Hb_000173_370 Hb_003216_110 Hb_003216_110 Hb_002025_140--Hb_003216_110 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350 Hb_000035_400 Hb_000035_400 Hb_000291_120--Hb_000035_400 Hb_000291_120--Hb_004032_350 Hb_073171_080 Hb_073171_080 Hb_000291_120--Hb_073171_080 Hb_004724_360 Hb_004724_360 Hb_000291_120--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_000291_120--Hb_000327_310 Hb_000211_090--Hb_000792_110 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_000211_090--Hb_000890_220 Hb_003666_050 Hb_003666_050 Hb_000211_090--Hb_003666_050 Hb_000211_090--Hb_003673_020 Hb_000684_180 Hb_000684_180 Hb_000573_040--Hb_000684_180 Hb_000134_360 Hb_000134_360 Hb_000573_040--Hb_000134_360 Hb_000212_280 Hb_000212_280 Hb_000573_040--Hb_000212_280 Hb_005028_010 Hb_005028_010 Hb_000573_040--Hb_005028_010 Hb_060437_010 Hb_060437_010 Hb_001034_020--Hb_060437_010 Hb_000331_480 Hb_000331_480 Hb_001034_020--Hb_000331_480 Hb_001439_180 Hb_001439_180 Hb_001034_020--Hb_001439_180 Hb_012760_200 Hb_012760_200 Hb_001034_020--Hb_012760_200 Hb_001034_020--Hb_004032_350 Hb_002675_190 Hb_002675_190 Hb_001034_020--Hb_002675_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
201.114 53.1845 20.3244 21.4998 227.461 195.904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.6304 28.1039 50.8442 26.8589 21.4664

CAGE analysis