Hb_004531_110

Information

Type -
Description -
Location Contig4531: 66530-68003
Sequence    

Annotation

kegg
ID rcu:RCOM_1492500
description tonoplast intrinsic protein, putative
nr
ID XP_012073404.1
description PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
swissprot
ID Q41951
description Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2
trembl
ID A0A067KQM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06324 PE=3 SV=1
Gene Ontology
ID GO:0016020
description aquaporin tip2-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43307: 66530-68090
cDNA
(Sanger)
(ID:Location)		 026_A17.ab1: 67077-68090 , 038_P03.ab1: 66865-68090 , 042_G22.ab1: 66922-68080

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_110 0.0 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
2 Hb_001071_060 0.1208324729 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
3 Hb_001832_210 0.1349500944 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
4 Hb_048643_010 0.1452697048 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
5 Hb_002119_070 0.1489832448 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_001148_040 0.1563872762 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
7 Hb_002928_120 0.1571056584 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
8 Hb_106136_010 0.1572234826 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_003579_040 0.161191986 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
10 Hb_010253_020 0.1655471931 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_000778_020 0.1665617271 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
12 Hb_000197_230 0.1673512153 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
13 Hb_000007_160 0.1686577573 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
14 Hb_012727_010 0.1724105399 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
15 Hb_000000_110 0.1741540076 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
16 Hb_010381_110 0.1745734289 - - PRA1 family protein [Theobroma cacao]
17 Hb_004032_250 0.1768263701 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001408_150 0.1776689261 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
19 Hb_001898_060 0.1784475196 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002324_040 0.180822371 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]

Gene co-expression network

sample Hb_004531_110 Hb_004531_110 Hb_001071_060 Hb_001071_060 Hb_004531_110--Hb_001071_060 Hb_001832_210 Hb_001832_210 Hb_004531_110--Hb_001832_210 Hb_048643_010 Hb_048643_010 Hb_004531_110--Hb_048643_010 Hb_002119_070 Hb_002119_070 Hb_004531_110--Hb_002119_070 Hb_001148_040 Hb_001148_040 Hb_004531_110--Hb_001148_040 Hb_002928_120 Hb_002928_120 Hb_004531_110--Hb_002928_120 Hb_001071_060--Hb_001832_210 Hb_000197_230 Hb_000197_230 Hb_001071_060--Hb_000197_230 Hb_064047_010 Hb_064047_010 Hb_001071_060--Hb_064047_010 Hb_000778_020 Hb_000778_020 Hb_001071_060--Hb_000778_020 Hb_002324_040 Hb_002324_040 Hb_001071_060--Hb_002324_040 Hb_000000_110 Hb_000000_110 Hb_001832_210--Hb_000000_110 Hb_001832_210--Hb_000197_230 Hb_000997_340 Hb_000997_340 Hb_001832_210--Hb_000997_340 Hb_000220_080 Hb_000220_080 Hb_001832_210--Hb_000220_080 Hb_000085_380 Hb_000085_380 Hb_001832_210--Hb_000085_380 Hb_000152_460 Hb_000152_460 Hb_048643_010--Hb_000152_460 Hb_000818_080 Hb_000818_080 Hb_048643_010--Hb_000818_080 Hb_048643_010--Hb_000000_110 Hb_048643_010--Hb_002928_120 Hb_000025_400 Hb_000025_400 Hb_048643_010--Hb_000025_400 Hb_010605_010 Hb_010605_010 Hb_002119_070--Hb_010605_010 Hb_000362_050 Hb_000362_050 Hb_002119_070--Hb_000362_050 Hb_002119_070--Hb_002928_120 Hb_002119_070--Hb_001071_060 Hb_151706_010 Hb_151706_010 Hb_002119_070--Hb_151706_010 Hb_000007_160 Hb_000007_160 Hb_001148_040--Hb_000007_160 Hb_140848_010 Hb_140848_010 Hb_001148_040--Hb_140848_010 Hb_010381_110 Hb_010381_110 Hb_001148_040--Hb_010381_110 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_002609_150 Hb_002609_150 Hb_001148_040--Hb_002609_150 Hb_001148_040--Hb_000778_020 Hb_000793_040 Hb_000793_040 Hb_002928_120--Hb_000793_040 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8792 282.015 61.363 288.149 52.2257 33.6629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74758 1.22958 0.963471 227.736 57.7667

CAGE analysis