Hb_004531_130

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig4531: 80788-84620
Sequence    

Annotation

kegg
ID rcu:RCOM_1492640
description Auxin-responsive protein IAA27, putative
nr
ID XP_012073398.1
description PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
swissprot
ID Q38826
description Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1
trembl
ID A0A067KYE4
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_06321 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43315: 81132-84602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_130 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
2 Hb_000742_290 0.0756719162 - - Reticuline oxidase precursor, putative [Ricinus communis]
3 Hb_010690_010 0.0907584957 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
4 Hb_050898_030 0.0992206198 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009070_010 0.0999103726 - - Spermidine synthase, putative [Ricinus communis]
6 Hb_000861_060 0.101809313 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
7 Hb_020738_010 0.104347809 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
8 Hb_000227_300 0.1067020625 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000739_190 0.1128987201 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_000085_410 0.1130576929 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
11 Hb_000310_040 0.1149098645 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
12 Hb_011574_020 0.1182405991 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
13 Hb_001638_340 0.1184574508 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000139_520 0.1185381001 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
15 Hb_059275_010 0.1192059151 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
16 Hb_000000_320 0.1217554033 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
17 Hb_084812_010 0.122734632 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
18 Hb_002918_270 0.1228912405 - - PREDICTED: protein E6-like [Populus euphratica]
19 Hb_007259_010 0.1231911675 - - hypothetical protein CISIN_1g0073972mg, partial [Citrus sinensis]
20 Hb_005111_020 0.1240191098 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_004531_130 Hb_004531_130 Hb_000742_290 Hb_000742_290 Hb_004531_130--Hb_000742_290 Hb_010690_010 Hb_010690_010 Hb_004531_130--Hb_010690_010 Hb_050898_030 Hb_050898_030 Hb_004531_130--Hb_050898_030 Hb_009070_010 Hb_009070_010 Hb_004531_130--Hb_009070_010 Hb_000861_060 Hb_000861_060 Hb_004531_130--Hb_000861_060 Hb_020738_010 Hb_020738_010 Hb_004531_130--Hb_020738_010 Hb_001059_110 Hb_001059_110 Hb_000742_290--Hb_001059_110 Hb_000085_410 Hb_000085_410 Hb_000742_290--Hb_000085_410 Hb_000742_290--Hb_010690_010 Hb_001882_080 Hb_001882_080 Hb_000742_290--Hb_001882_080 Hb_000922_050 Hb_000922_050 Hb_000742_290--Hb_000922_050 Hb_007259_010 Hb_007259_010 Hb_010690_010--Hb_007259_010 Hb_010690_010--Hb_001882_080 Hb_010690_010--Hb_020738_010 Hb_011574_020 Hb_011574_020 Hb_010690_010--Hb_011574_020 Hb_002918_270 Hb_002918_270 Hb_050898_030--Hb_002918_270 Hb_050898_030--Hb_020738_010 Hb_007122_020 Hb_007122_020 Hb_050898_030--Hb_007122_020 Hb_015292_020 Hb_015292_020 Hb_050898_030--Hb_015292_020 Hb_001136_160 Hb_001136_160 Hb_050898_030--Hb_001136_160 Hb_001025_130 Hb_001025_130 Hb_050898_030--Hb_001025_130 Hb_000227_300 Hb_000227_300 Hb_009070_010--Hb_000227_300 Hb_051408_010 Hb_051408_010 Hb_009070_010--Hb_051408_010 Hb_000000_320 Hb_000000_320 Hb_009070_010--Hb_000000_320 Hb_002626_060 Hb_002626_060 Hb_009070_010--Hb_002626_060 Hb_004112_070 Hb_004112_070 Hb_009070_010--Hb_004112_070 Hb_007426_190 Hb_007426_190 Hb_000861_060--Hb_007426_190 Hb_097292_010 Hb_097292_010 Hb_000861_060--Hb_097292_010 Hb_000861_060--Hb_000227_300 Hb_000586_110 Hb_000586_110 Hb_000861_060--Hb_000586_110 Hb_005731_040 Hb_005731_040 Hb_000861_060--Hb_005731_040 Hb_000310_040 Hb_000310_040 Hb_000861_060--Hb_000310_040 Hb_020738_010--Hb_011574_020 Hb_059275_010 Hb_059275_010 Hb_020738_010--Hb_059275_010 Hb_001794_040 Hb_001794_040 Hb_020738_010--Hb_001794_040 Hb_000012_350 Hb_000012_350 Hb_020738_010--Hb_000012_350 Hb_000077_280 Hb_000077_280 Hb_020738_010--Hb_000077_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.230391 19.4372 48.8147 91.5121 0.700088 0.274381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0765606 0.0301129 0.954617 1.90427 15.0589

CAGE analysis