Hb_004531_140

Information

Type -
Description -
Location Contig4531: 95750-96469
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04990g
description POPTRDRAFT_414236; hypothetical protein
nr
ID XP_012073396.1
description PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
swissprot
ID Q9STF9
description Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1
trembl
ID A0A067KZL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06320 PE=4 SV=1
Gene Ontology
ID GO:0009987
description pentatricopeptide repeat-containing protein at3g46870-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43316: 95722-96630
cDNA
(Sanger)
(ID:Location)		 001_K09.ab1: 95882-96630 , 006_O03.ab1: 95882-96603 , 021_C23.ab1: 95722-96443

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_140 0.0 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
2 Hb_000479_250 0.0805518413 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
3 Hb_069662_010 0.0820355475 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
4 Hb_000181_130 0.0827205674 - - ATP binding protein, putative [Ricinus communis]
5 Hb_009328_020 0.0831778624 - - conserved hypothetical protein [Ricinus communis]
6 Hb_109000_020 0.0835164601 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
7 Hb_002496_020 0.0850452297 - - DNA binding protein, putative [Ricinus communis]
8 Hb_000579_120 0.0875756468 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
9 Hb_001369_750 0.0884887799 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
10 Hb_000023_260 0.0901014137 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
11 Hb_028697_010 0.0908919024 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
12 Hb_011486_040 0.0923854213 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
13 Hb_001232_190 0.0937828915 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
14 Hb_004994_050 0.0944874851 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
15 Hb_019280_030 0.0959399985 - - -
16 Hb_133702_010 0.0963900321 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_152202_010 0.0967261243 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
18 Hb_000107_230 0.0983816307 - - unknown [Medicago truncatula]
19 Hb_001898_210 0.0985412106 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
20 Hb_002947_030 0.0988656831 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]

Gene co-expression network

sample Hb_004531_140 Hb_004531_140 Hb_000479_250 Hb_000479_250 Hb_004531_140--Hb_000479_250 Hb_069662_010 Hb_069662_010 Hb_004531_140--Hb_069662_010 Hb_000181_130 Hb_000181_130 Hb_004531_140--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_004531_140--Hb_009328_020 Hb_109000_020 Hb_109000_020 Hb_004531_140--Hb_109000_020 Hb_002496_020 Hb_002496_020 Hb_004531_140--Hb_002496_020 Hb_000479_250--Hb_009328_020 Hb_006274_030 Hb_006274_030 Hb_000479_250--Hb_006274_030 Hb_001369_750 Hb_001369_750 Hb_000479_250--Hb_001369_750 Hb_001366_180 Hb_001366_180 Hb_000479_250--Hb_001366_180 Hb_006275_070 Hb_006275_070 Hb_000479_250--Hb_006275_070 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_000608_380 Hb_000608_380 Hb_069662_010--Hb_000608_380 Hb_021346_030 Hb_021346_030 Hb_069662_010--Hb_021346_030 Hb_002184_150 Hb_002184_150 Hb_069662_010--Hb_002184_150 Hb_001205_300 Hb_001205_300 Hb_069662_010--Hb_001205_300 Hb_002079_030 Hb_002079_030 Hb_069662_010--Hb_002079_030 Hb_000181_130--Hb_009328_020 Hb_000594_050 Hb_000594_050 Hb_000181_130--Hb_000594_050 Hb_000621_010 Hb_000621_010 Hb_000181_130--Hb_000621_010 Hb_054865_150 Hb_054865_150 Hb_000181_130--Hb_054865_150 Hb_065500_060 Hb_065500_060 Hb_000181_130--Hb_065500_060 Hb_008847_030 Hb_008847_030 Hb_000181_130--Hb_008847_030 Hb_009328_020--Hb_109000_020 Hb_002289_080 Hb_002289_080 Hb_009328_020--Hb_002289_080 Hb_001898_210 Hb_001898_210 Hb_009328_020--Hb_001898_210 Hb_009898_050 Hb_009898_050 Hb_009328_020--Hb_009898_050 Hb_003878_150 Hb_003878_150 Hb_109000_020--Hb_003878_150 Hb_001232_190 Hb_001232_190 Hb_109000_020--Hb_001232_190 Hb_008616_050 Hb_008616_050 Hb_109000_020--Hb_008616_050 Hb_001662_100 Hb_001662_100 Hb_109000_020--Hb_001662_100 Hb_041290_020 Hb_041290_020 Hb_109000_020--Hb_041290_020 Hb_004191_020 Hb_004191_020 Hb_002496_020--Hb_004191_020 Hb_002496_020--Hb_000479_250 Hb_002496_020--Hb_001369_750 Hb_005405_020 Hb_005405_020 Hb_002496_020--Hb_005405_020 Hb_001584_200 Hb_001584_200 Hb_002496_020--Hb_001584_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9813 8.93817 15.0781 22.3977 13.0057 21.7549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.274 17.312 10.9496 9.57101 24.8868

CAGE analysis