Hb_004531_180

Information

Type -
Description -
Location Contig4531: 122066-125281
Sequence    

Annotation

kegg
ID rcu:RCOM_1493010
description nitrate transporter, putative
nr
ID XP_002516008.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9M817
description Protein NRT1/ PTR FAMILY 1.2 OS=Arabidopsis thaliana GN=NPF1.2 PE=1 SV=1
trembl
ID B9RQI9
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1493010 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_180 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_001205_270 0.1990393796 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
3 Hb_005723_060 0.2155748281 - - -
4 Hb_000893_010 0.216376551 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
5 Hb_005914_220 0.228584371 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
6 Hb_000521_070 0.2374995436 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
7 Hb_001157_070 0.2453926913 - - -
8 Hb_000009_490 0.2459497513 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
9 Hb_089785_010 0.2510597489 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
10 Hb_012366_010 0.2530160288 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
11 Hb_001269_570 0.2595673202 - - hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
12 Hb_152640_010 0.2596723333 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
13 Hb_007741_090 0.2600110957 - - Autophagy-related 8f -like protein [Gossypium arboreum]
14 Hb_017862_040 0.2604870399 - - PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
15 Hb_004705_090 0.2627816467 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000532_090 0.2707169626 - - ATPase [delta proteobacterium MLMS-1]
17 Hb_001486_050 0.2751287198 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
18 Hb_000702_050 0.2771129594 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
19 Hb_099990_020 0.277520798 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
20 Hb_004208_120 0.2781168332 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]

Gene co-expression network

sample Hb_004531_180 Hb_004531_180 Hb_001205_270 Hb_001205_270 Hb_004531_180--Hb_001205_270 Hb_005723_060 Hb_005723_060 Hb_004531_180--Hb_005723_060 Hb_000893_010 Hb_000893_010 Hb_004531_180--Hb_000893_010 Hb_005914_220 Hb_005914_220 Hb_004531_180--Hb_005914_220 Hb_000521_070 Hb_000521_070 Hb_004531_180--Hb_000521_070 Hb_001157_070 Hb_001157_070 Hb_004531_180--Hb_001157_070 Hb_000367_040 Hb_000367_040 Hb_001205_270--Hb_000367_040 Hb_001205_270--Hb_001157_070 Hb_000009_490 Hb_000009_490 Hb_001205_270--Hb_000009_490 Hb_089785_010 Hb_089785_010 Hb_001205_270--Hb_089785_010 Hb_012366_010 Hb_012366_010 Hb_001205_270--Hb_012366_010 Hb_005723_060--Hb_005914_220 Hb_000733_260 Hb_000733_260 Hb_005723_060--Hb_000733_260 Hb_000025_220 Hb_000025_220 Hb_005723_060--Hb_000025_220 Hb_000025_080 Hb_000025_080 Hb_005723_060--Hb_000025_080 Hb_005723_060--Hb_001205_270 Hb_004705_090 Hb_004705_090 Hb_000893_010--Hb_004705_090 Hb_104169_010 Hb_104169_010 Hb_000893_010--Hb_104169_010 Hb_072290_010 Hb_072290_010 Hb_000893_010--Hb_072290_010 Hb_006816_110 Hb_006816_110 Hb_000893_010--Hb_006816_110 Hb_000893_010--Hb_000521_070 Hb_001396_270 Hb_001396_270 Hb_005914_220--Hb_001396_270 Hb_000042_120 Hb_000042_120 Hb_005914_220--Hb_000042_120 Hb_000156_150 Hb_000156_150 Hb_005914_220--Hb_000156_150 Hb_006012_030 Hb_006012_030 Hb_005914_220--Hb_006012_030 Hb_000389_130 Hb_000389_130 Hb_005914_220--Hb_000389_130 Hb_001428_010 Hb_001428_010 Hb_005914_220--Hb_001428_010 Hb_004925_030 Hb_004925_030 Hb_000521_070--Hb_004925_030 Hb_000302_110 Hb_000302_110 Hb_000521_070--Hb_000302_110 Hb_007741_090 Hb_007741_090 Hb_000521_070--Hb_007741_090 Hb_007575_090 Hb_007575_090 Hb_000521_070--Hb_007575_090 Hb_002030_190 Hb_002030_190 Hb_000521_070--Hb_002030_190 Hb_000206_270 Hb_000206_270 Hb_000521_070--Hb_000206_270 Hb_001157_070--Hb_000009_490 Hb_001157_070--Hb_089785_010 Hb_001157_070--Hb_012366_010 Hb_000702_050 Hb_000702_050 Hb_001157_070--Hb_000702_050 Hb_003517_030 Hb_003517_030 Hb_001157_070--Hb_003517_030 Hb_001157_070--Hb_000367_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.291031 0.324671 0.599864 27.0079 3.91517 2.22329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.400018 0.0524579 0 0.0973808 0

CAGE analysis