Hb_004542_020

Information

Type -
Description -
Location Contig4542: 4038-4856
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00114
description ycf1; hypothetical chloroplast RF1
nr
ID YP_004327719.1
description hypothetical chloroplast RF1 [Hevea brasiliensis]
swissprot
ID Q09FY8
description Protein TIC 214 OS=Platanus occidentalis GN=TIC214 PE=3 SV=1
trembl
ID F2X0H3
description Hypothetical chloroplast RF1 OS=Hevea brasiliensis GN=ycf1 PE=4 SV=1
Gene Ontology
ID GO:0009507
description partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004542_020 0.0 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
2 Hb_015531_030 0.1694433565 - - conserved hypothetical protein [Ricinus communis]
3 Hb_143629_060 0.1704775319 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
4 Hb_001959_240 0.1763542894 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_004738_110 0.1829090002 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
6 Hb_000260_590 0.1871879306 - - electron transporter, putative [Ricinus communis]
7 Hb_005271_160 0.1910544045 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
8 Hb_001307_040 0.1913738481 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
9 Hb_000603_270 0.1925016008 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
10 Hb_001352_080 0.2014517649 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
11 Hb_048141_030 0.2022552213 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
12 Hb_001907_070 0.2037057687 - - 50S ribosomal protein L1p, putative [Ricinus communis]
13 Hb_000185_080 0.2074640846 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540 [Jatropha curcas]
14 Hb_000084_280 0.2085228006 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
15 Hb_012098_150 0.2139585333 - - ARC5 protein [Manihot esculenta]
16 Hb_000023_370 0.2159716982 - - -
17 Hb_006911_070 0.2170816757 - - 50S ribosomal protein L1p, putative [Ricinus communis]
18 Hb_005038_030 0.2199460007 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
19 Hb_004846_050 0.2205979626 - - PREDICTED: uncharacterized protein ycf23-like [Jatropha curcas]
20 Hb_008092_050 0.2246180148 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]

Gene co-expression network

sample Hb_004542_020 Hb_004542_020 Hb_015531_030 Hb_015531_030 Hb_004542_020--Hb_015531_030 Hb_143629_060 Hb_143629_060 Hb_004542_020--Hb_143629_060 Hb_001959_240 Hb_001959_240 Hb_004542_020--Hb_001959_240 Hb_004738_110 Hb_004738_110 Hb_004542_020--Hb_004738_110 Hb_000260_590 Hb_000260_590 Hb_004542_020--Hb_000260_590 Hb_005271_160 Hb_005271_160 Hb_004542_020--Hb_005271_160 Hb_015531_030--Hb_001959_240 Hb_164926_010 Hb_164926_010 Hb_015531_030--Hb_164926_010 Hb_002105_010 Hb_002105_010 Hb_015531_030--Hb_002105_010 Hb_001408_030 Hb_001408_030 Hb_015531_030--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_015531_030--Hb_008092_050 Hb_004466_050 Hb_004466_050 Hb_015531_030--Hb_004466_050 Hb_000084_280 Hb_000084_280 Hb_143629_060--Hb_000084_280 Hb_002276_070 Hb_002276_070 Hb_143629_060--Hb_002276_070 Hb_143629_060--Hb_004738_110 Hb_007313_100 Hb_007313_100 Hb_143629_060--Hb_007313_100 Hb_008092_060 Hb_008092_060 Hb_143629_060--Hb_008092_060 Hb_002053_110 Hb_002053_110 Hb_143629_060--Hb_002053_110 Hb_006911_070 Hb_006911_070 Hb_001959_240--Hb_006911_070 Hb_031042_060 Hb_031042_060 Hb_001959_240--Hb_031042_060 Hb_006618_070 Hb_006618_070 Hb_001959_240--Hb_006618_070 Hb_001454_150 Hb_001454_150 Hb_001959_240--Hb_001454_150 Hb_002498_170 Hb_002498_170 Hb_001959_240--Hb_002498_170 Hb_005288_110 Hb_005288_110 Hb_004738_110--Hb_005288_110 Hb_006052_030 Hb_006052_030 Hb_004738_110--Hb_006052_030 Hb_048141_030 Hb_048141_030 Hb_004738_110--Hb_048141_030 Hb_003058_020 Hb_003058_020 Hb_004738_110--Hb_003058_020 Hb_004738_110--Hb_002053_110 Hb_000088_150 Hb_000088_150 Hb_000260_590--Hb_000088_150 Hb_005479_010 Hb_005479_010 Hb_000260_590--Hb_005479_010 Hb_000505_080 Hb_000505_080 Hb_000260_590--Hb_000505_080 Hb_000866_340 Hb_000866_340 Hb_000260_590--Hb_000866_340 Hb_005063_080 Hb_005063_080 Hb_000260_590--Hb_005063_080 Hb_008206_060 Hb_008206_060 Hb_005271_160--Hb_008206_060 Hb_065525_130 Hb_065525_130 Hb_005271_160--Hb_065525_130 Hb_005271_160--Hb_008092_050 Hb_003900_030 Hb_003900_030 Hb_005271_160--Hb_003900_030 Hb_012098_150 Hb_012098_150 Hb_005271_160--Hb_012098_150 Hb_005271_160--Hb_001959_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.43402 0.725312 10.277 3.41535 6.68063 9.86341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.948406 0.813296 0.721727 0.497393 12.7935

CAGE analysis