Hb_004542_030

Information

Type -
Description -
Location Contig4542: 5443-7197
Sequence    

Annotation

kegg
ID atr:s00334p00014280
description AMTR_s00334p00014280; hypothetical protein
nr
ID ERN02874.1
description hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
swissprot
ID B1NWF4
description NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Manihot esculenta GN=ndhK PE=3 SV=1
trembl
ID W1P5D9
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00334p00014280 PE=3 SV=1
Gene Ontology
ID GO:0005886
description nadh dehydrogenase subunit k

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43362: 6964-7479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004542_030 0.0 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
2 Hb_002027_420 0.0841764591 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
3 Hb_001083_040 0.0941027659 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
4 Hb_000156_240 0.0982682902 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
5 Hb_001135_190 0.099388952 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
6 Hb_004811_010 0.1099493537 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
7 Hb_000832_050 0.1104151805 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
8 Hb_001951_040 0.1126036505 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
9 Hb_001001_130 0.114135475 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
10 Hb_006040_090 0.1167935206 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
11 Hb_103465_010 0.1180244724 - - RNA polymerase beta subunit [Hevea brasiliensis]
12 Hb_001610_100 0.1209668139 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
13 Hb_000270_040 0.1234895389 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000349_150 0.1252281137 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
15 Hb_159308_010 0.1255002843 - - ribosomal protein S4 [Cercidiphyllum japonicum]
16 Hb_004150_020 0.1266381648 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
17 Hb_001338_080 0.1271399599 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
18 Hb_004010_080 0.1277232771 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_001210_110 0.128594198 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
20 Hb_000922_110 0.1293201979 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]

Gene co-expression network

sample Hb_004542_030 Hb_004542_030 Hb_002027_420 Hb_002027_420 Hb_004542_030--Hb_002027_420 Hb_001083_040 Hb_001083_040 Hb_004542_030--Hb_001083_040 Hb_000156_240 Hb_000156_240 Hb_004542_030--Hb_000156_240 Hb_001135_190 Hb_001135_190 Hb_004542_030--Hb_001135_190 Hb_004811_010 Hb_004811_010 Hb_004542_030--Hb_004811_010 Hb_000832_050 Hb_000832_050 Hb_004542_030--Hb_000832_050 Hb_001951_040 Hb_001951_040 Hb_002027_420--Hb_001951_040 Hb_007122_010 Hb_007122_010 Hb_002027_420--Hb_007122_010 Hb_002027_420--Hb_000156_240 Hb_003362_050 Hb_003362_050 Hb_002027_420--Hb_003362_050 Hb_002027_420--Hb_001135_190 Hb_001083_040--Hb_000156_240 Hb_103465_010 Hb_103465_010 Hb_001083_040--Hb_103465_010 Hb_001083_040--Hb_001135_190 Hb_185274_020 Hb_185274_020 Hb_001083_040--Hb_185274_020 Hb_001674_050 Hb_001674_050 Hb_001083_040--Hb_001674_050 Hb_000156_240--Hb_103465_010 Hb_031194_010 Hb_031194_010 Hb_000156_240--Hb_031194_010 Hb_000156_240--Hb_004811_010 Hb_001135_190--Hb_001951_040 Hb_001135_170 Hb_001135_170 Hb_001135_190--Hb_001135_170 Hb_000282_100 Hb_000282_100 Hb_001135_190--Hb_000282_100 Hb_000029_390 Hb_000029_390 Hb_001135_190--Hb_000029_390 Hb_000349_150 Hb_000349_150 Hb_001135_190--Hb_000349_150 Hb_004855_030 Hb_004855_030 Hb_001135_190--Hb_004855_030 Hb_007645_060 Hb_007645_060 Hb_004811_010--Hb_007645_060 Hb_088080_040 Hb_088080_040 Hb_004811_010--Hb_088080_040 Hb_004811_010--Hb_031194_010 Hb_006040_090 Hb_006040_090 Hb_004811_010--Hb_006040_090 Hb_149598_010 Hb_149598_010 Hb_004811_010--Hb_149598_010 Hb_151890_020 Hb_151890_020 Hb_004811_010--Hb_151890_020 Hb_000832_050--Hb_004855_030 Hb_000832_050--Hb_000349_150 Hb_000893_040 Hb_000893_040 Hb_000832_050--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_000832_050--Hb_008489_030 Hb_000977_260 Hb_000977_260 Hb_000832_050--Hb_000977_260 Hb_003251_010 Hb_003251_010 Hb_000832_050--Hb_003251_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.372688 0.558931 15.6301 3.73522 0.504354 0.868398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0748701 0.0294484 0.934386 2.05016 117.5

CAGE analysis