Hb_004543_030

Information

Type -
Description -
Location Contig4543: 60864-73190
Sequence    

Annotation

kegg
ID rcu:RCOM_0700450
description ATP binding protein, putative
nr
ID XP_012071475.1
description PREDICTED: FIP1[V]-like protein [Jatropha curcas]
swissprot
ID F4KDH9
description FIP1[V]-like protein OS=Arabidopsis thaliana GN=FIPS5 PE=1 SV=1
trembl
ID A0A067KR95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04010 PE=4 SV=1
Gene Ontology
ID GO:0005488
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43365: 60994-73114 , PASA_asmbl_43366: 60994-69795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004543_030 0.0 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
2 Hb_034243_020 0.0558023456 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
3 Hb_007576_120 0.0573335763 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
4 Hb_002524_040 0.0574844051 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
5 Hb_004718_010 0.0634496084 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
6 Hb_000997_030 0.0707905336 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
7 Hb_010315_090 0.0747470471 - - suppressor of ty, putative [Ricinus communis]
8 Hb_000139_090 0.0753698592 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
9 Hb_000959_040 0.0756401804 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
10 Hb_004884_010 0.0757506589 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
11 Hb_001493_040 0.076733524 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
12 Hb_001417_050 0.0774607205 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
13 Hb_010578_060 0.0782455803 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
14 Hb_030565_090 0.0797871253 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
15 Hb_000012_140 0.0800700328 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001268_350 0.0825467784 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
17 Hb_144831_010 0.0830865268 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
18 Hb_004480_040 0.0835572719 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
19 Hb_001247_070 0.0841476204 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
20 Hb_001080_270 0.0847369808 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]

Gene co-expression network

sample Hb_004543_030 Hb_004543_030 Hb_034243_020 Hb_034243_020 Hb_004543_030--Hb_034243_020 Hb_007576_120 Hb_007576_120 Hb_004543_030--Hb_007576_120 Hb_002524_040 Hb_002524_040 Hb_004543_030--Hb_002524_040 Hb_004718_010 Hb_004718_010 Hb_004543_030--Hb_004718_010 Hb_000997_030 Hb_000997_030 Hb_004543_030--Hb_000997_030 Hb_010315_090 Hb_010315_090 Hb_004543_030--Hb_010315_090 Hb_004884_010 Hb_004884_010 Hb_034243_020--Hb_004884_010 Hb_001493_040 Hb_001493_040 Hb_034243_020--Hb_001493_040 Hb_034243_020--Hb_007576_120 Hb_034243_020--Hb_010315_090 Hb_133047_010 Hb_133047_010 Hb_034243_020--Hb_133047_010 Hb_007576_120--Hb_001493_040 Hb_000139_090 Hb_000139_090 Hb_007576_120--Hb_000139_090 Hb_005539_090 Hb_005539_090 Hb_007576_120--Hb_005539_090 Hb_000012_140 Hb_000012_140 Hb_007576_120--Hb_000012_140 Hb_002524_040--Hb_000139_090 Hb_002524_040--Hb_007576_120 Hb_030565_090 Hb_030565_090 Hb_002524_040--Hb_030565_090 Hb_001247_070 Hb_001247_070 Hb_002524_040--Hb_001247_070 Hb_002524_040--Hb_034243_020 Hb_010578_060 Hb_010578_060 Hb_004718_010--Hb_010578_060 Hb_000959_040 Hb_000959_040 Hb_004718_010--Hb_000959_040 Hb_001268_350 Hb_001268_350 Hb_004718_010--Hb_001268_350 Hb_002301_080 Hb_002301_080 Hb_004718_010--Hb_002301_080 Hb_001080_270 Hb_001080_270 Hb_004718_010--Hb_001080_270 Hb_000264_100 Hb_000264_100 Hb_000997_030--Hb_000264_100 Hb_000997_030--Hb_030565_090 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_000107_040 Hb_000107_040 Hb_000997_030--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_000997_030--Hb_000023_060 Hb_000997_030--Hb_034243_020 Hb_000329_130 Hb_000329_130 Hb_010315_090--Hb_000329_130 Hb_001417_050 Hb_001417_050 Hb_010315_090--Hb_001417_050 Hb_010315_090--Hb_001493_040 Hb_019153_020 Hb_019153_020 Hb_010315_090--Hb_019153_020 Hb_010315_090--Hb_004884_010 Hb_140049_020 Hb_140049_020 Hb_010315_090--Hb_140049_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.0571 51.565 13.05 11.1575 45.968 47.4442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0535 14.0163 20.3553 24.4116 28.3485

CAGE analysis