Hb_004544_040

Information

Type -
Description -
Location Contig4544: 16492-19698
Sequence    

Annotation

kegg
ID pvu:PHAVU_010G103000g
description hypothetical protein
nr
ID XP_007135124.1
description hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
swissprot
ID O95478
description Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=NSA2 PE=1 SV=1
trembl
ID V7AR68
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G103000g PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosome biogenesis protein nsa2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004544_040 0.0 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
2 Hb_016461_020 0.0827565568 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007955_050 0.0878590729 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
4 Hb_001408_110 0.0884396129 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
5 Hb_002874_090 0.0919208767 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
6 Hb_001558_040 0.0926902281 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
7 Hb_001307_240 0.0955599655 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
8 Hb_000579_130 0.1001415399 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_007062_040 0.1010888536 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
10 Hb_004204_130 0.1026356454 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
11 Hb_001856_180 0.1034745742 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
12 Hb_031641_010 0.1044696103 - - conserved hypothetical protein [Ricinus communis]
13 Hb_015026_130 0.1047135244 - - quinone oxidoreductase, putative [Ricinus communis]
14 Hb_000017_230 0.1057269703 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
15 Hb_001584_350 0.105971973 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
16 Hb_000089_180 0.1066401914 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
17 Hb_006502_030 0.1069303233 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
18 Hb_092000_010 0.1072987494 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
19 Hb_024650_080 0.1074808669 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
20 Hb_006468_010 0.1075076997 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004544_040 Hb_004544_040 Hb_016461_020 Hb_016461_020 Hb_004544_040--Hb_016461_020 Hb_007955_050 Hb_007955_050 Hb_004544_040--Hb_007955_050 Hb_001408_110 Hb_001408_110 Hb_004544_040--Hb_001408_110 Hb_002874_090 Hb_002874_090 Hb_004544_040--Hb_002874_090 Hb_001558_040 Hb_001558_040 Hb_004544_040--Hb_001558_040 Hb_001307_240 Hb_001307_240 Hb_004544_040--Hb_001307_240 Hb_000297_030 Hb_000297_030 Hb_016461_020--Hb_000297_030 Hb_000890_030 Hb_000890_030 Hb_016461_020--Hb_000890_030 Hb_005305_100 Hb_005305_100 Hb_016461_020--Hb_005305_100 Hb_000046_600 Hb_000046_600 Hb_016461_020--Hb_000046_600 Hb_006468_010 Hb_006468_010 Hb_016461_020--Hb_006468_010 Hb_000579_130 Hb_000579_130 Hb_016461_020--Hb_000579_130 Hb_000795_040 Hb_000795_040 Hb_007955_050--Hb_000795_040 Hb_000996_020 Hb_000996_020 Hb_007955_050--Hb_000996_020 Hb_000373_170 Hb_000373_170 Hb_007955_050--Hb_000373_170 Hb_001925_060 Hb_001925_060 Hb_007955_050--Hb_001925_060 Hb_000189_600 Hb_000189_600 Hb_007955_050--Hb_000189_600 Hb_000661_120 Hb_000661_120 Hb_007955_050--Hb_000661_120 Hb_024650_080 Hb_024650_080 Hb_001408_110--Hb_024650_080 Hb_000089_180 Hb_000089_180 Hb_001408_110--Hb_000089_180 Hb_004037_020 Hb_004037_020 Hb_001408_110--Hb_004037_020 Hb_007839_020 Hb_007839_020 Hb_001408_110--Hb_007839_020 Hb_001241_010 Hb_001241_010 Hb_001408_110--Hb_001241_010 Hb_010407_080 Hb_010407_080 Hb_001408_110--Hb_010407_080 Hb_002045_250 Hb_002045_250 Hb_002874_090--Hb_002045_250 Hb_092000_010 Hb_092000_010 Hb_002874_090--Hb_092000_010 Hb_007062_030 Hb_007062_030 Hb_002874_090--Hb_007062_030 Hb_001552_030 Hb_001552_030 Hb_002874_090--Hb_001552_030 Hb_000017_230 Hb_000017_230 Hb_002874_090--Hb_000017_230 Hb_001558_040--Hb_001307_240 Hb_002007_260 Hb_002007_260 Hb_001558_040--Hb_002007_260 Hb_001558_040--Hb_000579_130 Hb_001085_080 Hb_001085_080 Hb_001558_040--Hb_001085_080 Hb_000020_160 Hb_000020_160 Hb_001558_040--Hb_000020_160 Hb_158845_060 Hb_158845_060 Hb_001558_040--Hb_158845_060 Hb_004837_280 Hb_004837_280 Hb_001307_240--Hb_004837_280 Hb_001307_240--Hb_002007_260 Hb_001307_240--Hb_001552_030 Hb_001085_290 Hb_001085_290 Hb_001307_240--Hb_001085_290 Hb_001307_240--Hb_000017_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.577523 0.934133 0.819745 1.00857 0.31066 0.734165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.275882 0.506323 0.200689 0.885583 0.669456

CAGE analysis