Hb_004544_080

Information

Type -
Description -
Location Contig4544: 48144-49674
Sequence    

Annotation

kegg
ID pop:POPTR_0003s19600g
description POPTRDRAFT_555048; lectin protein kinase
nr
ID XP_002303928.1
description lectin protein kinase [Populus trichocarpa]
swissprot
ID O04533
description Putative L-type lectin-domain containing receptor kinase V.2 OS=Arabidopsis thaliana GN=LECRK52 PE=3 SV=1
trembl
ID B9GWY3
description Lectin protein kinase OS=Populus trichocarpa GN=POPTR_0003s19600g PE=4 SV=1
Gene Ontology
ID GO:0000166
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004544_080 0.0 - - lectin protein kinase [Populus trichocarpa]
2 Hb_003462_150 0.0045116984 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
3 Hb_000141_230 0.0219340307 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
4 Hb_000608_080 0.0400027849 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
5 Hb_002999_090 0.0534587666 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002556_020 0.0734808671 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
7 Hb_002475_020 0.075696549 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
8 Hb_000302_060 0.0780896714 - - unnamed protein product [Vitis vinifera]
9 Hb_001901_010 0.0823220589 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
10 Hb_001971_070 0.0936576957 - - unnamed protein product [Coffea canephora]
11 Hb_166813_010 0.1014520742 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
12 Hb_002204_030 0.1045380392 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
13 Hb_009515_010 0.1045533044 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
14 Hb_006153_200 0.1079585154 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
15 Hb_000951_030 0.1120013067 - - kinase, putative [Ricinus communis]
16 Hb_031340_030 0.116942933 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
17 Hb_164162_020 0.1208553607 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
18 Hb_005228_170 0.1234520829 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
19 Hb_000948_070 0.1247338907 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
20 Hb_012762_070 0.1281247559 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]

Gene co-expression network

sample Hb_004544_080 Hb_004544_080 Hb_003462_150 Hb_003462_150 Hb_004544_080--Hb_003462_150 Hb_000141_230 Hb_000141_230 Hb_004544_080--Hb_000141_230 Hb_000608_080 Hb_000608_080 Hb_004544_080--Hb_000608_080 Hb_002999_090 Hb_002999_090 Hb_004544_080--Hb_002999_090 Hb_002556_020 Hb_002556_020 Hb_004544_080--Hb_002556_020 Hb_002475_020 Hb_002475_020 Hb_004544_080--Hb_002475_020 Hb_003462_150--Hb_000141_230 Hb_003462_150--Hb_000608_080 Hb_003462_150--Hb_002999_090 Hb_003462_150--Hb_002556_020 Hb_003462_150--Hb_002475_020 Hb_000141_230--Hb_000608_080 Hb_000302_060 Hb_000302_060 Hb_000141_230--Hb_000302_060 Hb_000141_230--Hb_002999_090 Hb_000141_230--Hb_002556_020 Hb_000608_080--Hb_000302_060 Hb_009515_010 Hb_009515_010 Hb_000608_080--Hb_009515_010 Hb_000608_080--Hb_002999_090 Hb_002999_090--Hb_002556_020 Hb_001901_010 Hb_001901_010 Hb_002999_090--Hb_001901_010 Hb_002999_090--Hb_002475_020 Hb_000951_030 Hb_000951_030 Hb_002556_020--Hb_000951_030 Hb_002556_020--Hb_002475_020 Hb_002556_020--Hb_000302_060 Hb_002475_020--Hb_000141_230 Hb_002475_020--Hb_000302_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0127624 0 0.0124363 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0552055 0

CAGE analysis