Hb_004544_090

Information

Type -
Description -
Location Contig4544: 51398-53047
Sequence    

Annotation

kegg
ID rcu:RCOM_1592960
description cytochrome P450, putative (EC:1.14.13.88)
nr
ID XP_002510308.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID O49859
description Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1
trembl
ID B9R7L5
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1592960 PE=3 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 cyp82d47-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43369: 51346-53253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004544_090 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_001123_170 0.0861010196 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000411_050 0.092233751 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
4 Hb_002276_100 0.0960311931 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
5 Hb_020285_010 0.099351406 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
6 Hb_006002_010 0.0996285499 transcription factor TF Family: MYB Myb domain protein 5 isoform 1 [Theobroma cacao]
7 Hb_007894_030 0.1042117789 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_005784_020 0.1079999303 - - Protein MKS1, putative [Ricinus communis]
9 Hb_017604_020 0.1106873774 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
10 Hb_002078_250 0.1119795078 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000497_100 0.112192072 - - respiratory burst oxidase D [Manihot esculenta]
12 Hb_014361_020 0.1133678504 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
13 Hb_000679_260 0.1149444501 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002324_050 0.117066347 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
15 Hb_000847_050 0.1174223199 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
16 Hb_046101_010 0.1192253883 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
17 Hb_003656_170 0.1196945075 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
18 Hb_001636_010 0.1201300963 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
19 Hb_000382_030 0.1204686483 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
20 Hb_038777_010 0.1206990676 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_004544_090 Hb_004544_090 Hb_001123_170 Hb_001123_170 Hb_004544_090--Hb_001123_170 Hb_000411_050 Hb_000411_050 Hb_004544_090--Hb_000411_050 Hb_002276_100 Hb_002276_100 Hb_004544_090--Hb_002276_100 Hb_020285_010 Hb_020285_010 Hb_004544_090--Hb_020285_010 Hb_006002_010 Hb_006002_010 Hb_004544_090--Hb_006002_010 Hb_007894_030 Hb_007894_030 Hb_004544_090--Hb_007894_030 Hb_003656_170 Hb_003656_170 Hb_001123_170--Hb_003656_170 Hb_001377_130 Hb_001377_130 Hb_001123_170--Hb_001377_130 Hb_000382_030 Hb_000382_030 Hb_001123_170--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_002078_250 Hb_002078_250 Hb_001123_170--Hb_002078_250 Hb_002450_180 Hb_002450_180 Hb_000411_050--Hb_002450_180 Hb_000411_050--Hb_002078_250 Hb_000847_050 Hb_000847_050 Hb_000411_050--Hb_000847_050 Hb_000454_200 Hb_000454_200 Hb_000411_050--Hb_000454_200 Hb_000679_260 Hb_000679_260 Hb_000411_050--Hb_000679_260 Hb_074312_020 Hb_074312_020 Hb_002276_100--Hb_074312_020 Hb_002276_100--Hb_020285_010 Hb_000280_110 Hb_000280_110 Hb_002276_100--Hb_000280_110 Hb_046101_010 Hb_046101_010 Hb_002276_100--Hb_046101_010 Hb_038777_010 Hb_038777_010 Hb_002276_100--Hb_038777_010 Hb_001369_070 Hb_001369_070 Hb_002276_100--Hb_001369_070 Hb_000497_100 Hb_000497_100 Hb_020285_010--Hb_000497_100 Hb_020285_010--Hb_046101_010 Hb_020285_010--Hb_001369_070 Hb_020285_010--Hb_007894_030 Hb_020285_010--Hb_038777_010 Hb_003497_020 Hb_003497_020 Hb_006002_010--Hb_003497_020 Hb_006002_010--Hb_002078_250 Hb_017604_020 Hb_017604_020 Hb_006002_010--Hb_017604_020 Hb_002324_050 Hb_002324_050 Hb_006002_010--Hb_002324_050 Hb_000069_430 Hb_000069_430 Hb_006002_010--Hb_000069_430 Hb_007894_030--Hb_001369_070 Hb_007894_030--Hb_000497_100 Hb_010417_100 Hb_010417_100 Hb_007894_030--Hb_010417_100 Hb_007894_030--Hb_038777_010 Hb_001636_010 Hb_001636_010 Hb_007894_030--Hb_001636_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.575165 49.3393 21.8635 30.7311 1.33707 1.48743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0300282 0.22401 32.2201 14.8315

CAGE analysis