Hb_004545_060

Information

Type -
Description -
Location Contig4545: 58989-61475
Sequence    

Annotation

kegg
ID rcu:RCOM_1429540
description trafficking protein particle complex subunit 6b, putative
nr
ID XP_012089155.1
description PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
swissprot
ID Q86SZ2
description Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1
trembl
ID A0A067JUC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23423 PE=4 SV=1
Gene Ontology
ID GO:0009737
description trafficking protein particle complex subunit 6b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43377: 58546-58995 , PASA_asmbl_43378: 59365-59520 , PASA_asmbl_43379: 59785-59918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_060 0.0 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
2 Hb_010180_020 0.0592580601 - - hypothetical protein glysoja_030394 [Glycine soja]
3 Hb_000045_090 0.0642700888 - - PREDICTED: syntaxin-31 [Jatropha curcas]
4 Hb_002078_150 0.0647151958 - - protein with unknown function [Ricinus communis]
5 Hb_000103_560 0.0693180953 - - ADP-ribosylation factor, putative [Ricinus communis]
6 Hb_141131_010 0.0701172174 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
7 Hb_003038_030 0.0712002271 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
8 Hb_148912_010 0.0733648323 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001604_080 0.0736046431 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
10 Hb_004306_020 0.0754288029 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
11 Hb_004128_190 0.0756767238 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
12 Hb_009557_070 0.0759001375 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002774_060 0.0762422808 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
14 Hb_002411_170 0.0768726148 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
15 Hb_063716_050 0.0776839859 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
16 Hb_012008_020 0.0825682453 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
17 Hb_000529_190 0.0825766532 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
18 Hb_000329_030 0.0828137706 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
19 Hb_000080_060 0.0852642884 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
20 Hb_004944_010 0.0857787872 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]

Gene co-expression network

sample Hb_004545_060 Hb_004545_060 Hb_010180_020 Hb_010180_020 Hb_004545_060--Hb_010180_020 Hb_000045_090 Hb_000045_090 Hb_004545_060--Hb_000045_090 Hb_002078_150 Hb_002078_150 Hb_004545_060--Hb_002078_150 Hb_000103_560 Hb_000103_560 Hb_004545_060--Hb_000103_560 Hb_141131_010 Hb_141131_010 Hb_004545_060--Hb_141131_010 Hb_003038_030 Hb_003038_030 Hb_004545_060--Hb_003038_030 Hb_001604_080 Hb_001604_080 Hb_010180_020--Hb_001604_080 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_002774_060 Hb_002774_060 Hb_000045_090--Hb_002774_060 Hb_009557_070 Hb_009557_070 Hb_000045_090--Hb_009557_070 Hb_000329_030 Hb_000329_030 Hb_000045_090--Hb_000329_030 Hb_143398_010 Hb_143398_010 Hb_000045_090--Hb_143398_010 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_004128_190 Hb_004128_190 Hb_002078_150--Hb_004128_190 Hb_002078_150--Hb_000103_560 Hb_000398_180 Hb_000398_180 Hb_002078_150--Hb_000398_180 Hb_003847_080 Hb_003847_080 Hb_002078_150--Hb_003847_080 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_063716_050 Hb_063716_050 Hb_000103_560--Hb_063716_050 Hb_000832_140 Hb_000832_140 Hb_000103_560--Hb_000832_140 Hb_000103_560--Hb_001604_080 Hb_000103_560--Hb_000815_040 Hb_000529_190 Hb_000529_190 Hb_000103_560--Hb_000529_190 Hb_004944_010 Hb_004944_010 Hb_141131_010--Hb_004944_010 Hb_001124_210 Hb_001124_210 Hb_141131_010--Hb_001124_210 Hb_141131_010--Hb_003038_030 Hb_000620_080 Hb_000620_080 Hb_141131_010--Hb_000620_080 Hb_002217_310 Hb_002217_310 Hb_141131_010--Hb_002217_310 Hb_148912_010 Hb_148912_010 Hb_003038_030--Hb_148912_010 Hb_003038_030--Hb_002411_170 Hb_000019_230 Hb_000019_230 Hb_003038_030--Hb_000019_230 Hb_000172_370 Hb_000172_370 Hb_003038_030--Hb_000172_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3835 5.39002 7.35434 14.3958 16.7985 26.1379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.237 24.6414 17.2509 7.02906 4.81313

CAGE analysis