Hb_004545_110

Information

Type -
Description -
Location Contig4545: 157972-162986
Sequence    

Annotation

kegg
ID tcc:TCM_026493
description DHHC-type zinc finger family protein isoform 1
nr
ID XP_007030746.1
description DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
swissprot
ID Q3EBC2
description Probable protein S-acyltransferase 17 OS=Arabidopsis thaliana GN=PAT17 PE=2 SV=1
trembl
ID A0A061F2Y5
description S-acyltransferase OS=Theobroma cacao GN=TCM_026493 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43390: 158347-162808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_110 0.0 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
2 Hb_000666_100 0.049430076 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
3 Hb_000080_130 0.0569438783 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
4 Hb_008616_050 0.0594258329 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
5 Hb_133702_010 0.0630289354 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000347_240 0.0639487286 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
7 Hb_005800_030 0.0669871313 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
8 Hb_003878_090 0.0700317792 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
9 Hb_005167_010 0.0725654887 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
10 Hb_023371_020 0.0734149631 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
11 Hb_000663_060 0.0750669876 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
12 Hb_001232_190 0.0752485753 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
13 Hb_001828_150 0.075422019 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
14 Hb_013575_010 0.0756951053 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
15 Hb_000676_120 0.0760221968 - - -
16 Hb_001821_110 0.0779772892 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
17 Hb_000069_720 0.0782997587 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
18 Hb_001189_070 0.0791627877 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
19 Hb_000976_120 0.0795649046 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
20 Hb_002641_060 0.0798773864 - - prefoldin subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_004545_110 Hb_004545_110 Hb_000666_100 Hb_000666_100 Hb_004545_110--Hb_000666_100 Hb_000080_130 Hb_000080_130 Hb_004545_110--Hb_000080_130 Hb_008616_050 Hb_008616_050 Hb_004545_110--Hb_008616_050 Hb_133702_010 Hb_133702_010 Hb_004545_110--Hb_133702_010 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_005800_030 Hb_005800_030 Hb_004545_110--Hb_005800_030 Hb_003057_060 Hb_003057_060 Hb_000666_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_000666_100--Hb_013575_010 Hb_000666_100--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_000666_100--Hb_000200_020 Hb_002641_060 Hb_002641_060 Hb_000666_100--Hb_002641_060 Hb_015675_040 Hb_015675_040 Hb_000080_130--Hb_015675_040 Hb_001269_130 Hb_001269_130 Hb_000080_130--Hb_001269_130 Hb_000080_130--Hb_133702_010 Hb_005167_010 Hb_005167_010 Hb_000080_130--Hb_005167_010 Hb_000663_060 Hb_000663_060 Hb_000080_130--Hb_000663_060 Hb_001232_190 Hb_001232_190 Hb_008616_050--Hb_001232_190 Hb_008616_050--Hb_002641_060 Hb_009898_050 Hb_009898_050 Hb_008616_050--Hb_009898_050 Hb_001318_280 Hb_001318_280 Hb_008616_050--Hb_001318_280 Hb_008847_030 Hb_008847_030 Hb_008616_050--Hb_008847_030 Hb_133702_010--Hb_005800_030 Hb_004452_120 Hb_004452_120 Hb_133702_010--Hb_004452_120 Hb_000721_030 Hb_000721_030 Hb_133702_010--Hb_000721_030 Hb_007975_060 Hb_007975_060 Hb_133702_010--Hb_007975_060 Hb_003878_090 Hb_003878_090 Hb_133702_010--Hb_003878_090 Hb_001189_070 Hb_001189_070 Hb_000347_240--Hb_001189_070 Hb_000483_300 Hb_000483_300 Hb_000347_240--Hb_000483_300 Hb_001489_090 Hb_001489_090 Hb_000347_240--Hb_001489_090 Hb_006573_190 Hb_006573_190 Hb_000347_240--Hb_006573_190 Hb_000566_120 Hb_000566_120 Hb_000347_240--Hb_000566_120 Hb_002820_020 Hb_002820_020 Hb_005800_030--Hb_002820_020 Hb_003878_150 Hb_003878_150 Hb_005800_030--Hb_003878_150 Hb_005800_030--Hb_004452_120 Hb_000061_180 Hb_000061_180 Hb_005800_030--Hb_000061_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.74283 4.76471 10.9795 13.3005 6.88785 6.89766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.69512 10.5794 8.2893 8.80676 10.7079

CAGE analysis