Hb_004545_120

Information

Type -
Description -
Location Contig4545: 164440-167103
Sequence    

Annotation

kegg
ID tcc:TCM_026494
description A_TM021B04.11 protein
nr
ID XP_012089141.1
description PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23407 PE=4 SV=1
Gene Ontology
ID GO:0009507
description stress regulated protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43393: 164392-164884 , PASA_asmbl_43394: 166152-166937 , PASA_asmbl_43395: 167243-167613 , PASA_asmbl_43396: 167953-169002
cDNA
(Sanger)
(ID:Location)		 003_A04.ab1: 167968-168126 , 003_J02.ab1: 167953-169002 , 046_J05.ab1: 167969-169002

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_120 0.0 - - PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]
2 Hb_000011_560 0.097382702 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
3 Hb_000334_050 0.1210779757 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
4 Hb_000235_070 0.1281140662 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
5 Hb_000307_070 0.1330746471 - - protein kinase, putative [Ricinus communis]
6 Hb_011476_030 0.1361262476 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
7 Hb_015967_030 0.1481961525 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
8 Hb_000483_100 0.1484622542 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
9 Hb_000327_200 0.1491627912 - - glutathione-s-transferase omega, putative [Ricinus communis]
10 Hb_000446_040 0.1508302086 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
11 Hb_005000_080 0.1513790654 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
12 Hb_000933_110 0.1514748786 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
13 Hb_001587_040 0.151877018 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
14 Hb_001054_070 0.1535933025 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
15 Hb_005917_020 0.1536088242 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
16 Hb_003664_030 0.1542845137 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
17 Hb_027445_100 0.1561730313 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
18 Hb_005784_030 0.1579865228 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
19 Hb_000310_060 0.1580459635 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
20 Hb_000368_120 0.1584159142 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]

Gene co-expression network

sample Hb_004545_120 Hb_004545_120 Hb_000011_560 Hb_000011_560 Hb_004545_120--Hb_000011_560 Hb_000334_050 Hb_000334_050 Hb_004545_120--Hb_000334_050 Hb_000235_070 Hb_000235_070 Hb_004545_120--Hb_000235_070 Hb_000307_070 Hb_000307_070 Hb_004545_120--Hb_000307_070 Hb_011476_030 Hb_011476_030 Hb_004545_120--Hb_011476_030 Hb_015967_030 Hb_015967_030 Hb_004545_120--Hb_015967_030 Hb_000310_060 Hb_000310_060 Hb_000011_560--Hb_000310_060 Hb_001587_040 Hb_001587_040 Hb_000011_560--Hb_001587_040 Hb_000327_200 Hb_000327_200 Hb_000011_560--Hb_000327_200 Hb_005527_060 Hb_005527_060 Hb_000011_560--Hb_005527_060 Hb_003664_030 Hb_003664_030 Hb_000011_560--Hb_003664_030 Hb_004223_270 Hb_004223_270 Hb_000334_050--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000334_050--Hb_022425_050 Hb_000933_110 Hb_000933_110 Hb_000334_050--Hb_000933_110 Hb_027445_100 Hb_027445_100 Hb_000334_050--Hb_027445_100 Hb_005731_100 Hb_005731_100 Hb_000334_050--Hb_005731_100 Hb_000334_050--Hb_000327_200 Hb_001269_620 Hb_001269_620 Hb_000235_070--Hb_001269_620 Hb_061256_010 Hb_061256_010 Hb_000235_070--Hb_061256_010 Hb_005000_080 Hb_005000_080 Hb_000235_070--Hb_005000_080 Hb_027506_040 Hb_027506_040 Hb_000235_070--Hb_027506_040 Hb_000235_070--Hb_015967_030 Hb_000088_260 Hb_000088_260 Hb_000235_070--Hb_000088_260 Hb_000307_070--Hb_001587_040 Hb_000820_140 Hb_000820_140 Hb_000307_070--Hb_000820_140 Hb_000307_070--Hb_000334_050 Hb_000189_130 Hb_000189_130 Hb_000307_070--Hb_000189_130 Hb_005917_020 Hb_005917_020 Hb_000307_070--Hb_005917_020 Hb_000307_070--Hb_000310_060 Hb_007217_010 Hb_007217_010 Hb_011476_030--Hb_007217_010 Hb_000574_470 Hb_000574_470 Hb_011476_030--Hb_000574_470 Hb_000212_250 Hb_000212_250 Hb_011476_030--Hb_000212_250 Hb_011476_030--Hb_027445_100 Hb_002915_010 Hb_002915_010 Hb_011476_030--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_011476_030--Hb_005665_090 Hb_007558_090 Hb_007558_090 Hb_015967_030--Hb_007558_090 Hb_000116_250 Hb_000116_250 Hb_015967_030--Hb_000116_250 Hb_000926_080 Hb_000926_080 Hb_015967_030--Hb_000926_080 Hb_015967_030--Hb_027506_040 Hb_049575_010 Hb_049575_010 Hb_015967_030--Hb_049575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.760804 5.73987 14.0711 4.29435 0.58844 0.384281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58988 3.61654 3.19858 2.71043 10.6728

CAGE analysis