Hb_004545_150

Information

Type -
Description -
Location Contig4545: 178143-181365
Sequence    

Annotation

kegg
ID rcu:RCOM_1429780
description Ubiquitin-protein ligase BRE1A, putative
nr
ID XP_012089138.1
description PREDICTED: paramyosin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23404 PE=4 SV=1
Gene Ontology
ID GO:0005783
description ubiquitin-protein ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43400: 178954-181287
cDNA
(Sanger)
(ID:Location)		 025_H07.ab1: 180450-181287 , 047_A13.ab1: 180575-181282

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_150 0.0 - - PREDICTED: paramyosin [Jatropha curcas]
2 Hb_010931_100 0.0673794161 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
3 Hb_002609_260 0.0889480407 - - CCCH-type zinc finger protein [Hevea brasiliensis]
4 Hb_002989_080 0.0914512769 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
5 Hb_000264_190 0.0929227741 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
6 Hb_005488_100 0.095187481 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
7 Hb_000563_540 0.0985723881 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
8 Hb_003906_120 0.1002849714 - - -
9 Hb_002232_180 0.1029898992 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
10 Hb_003906_110 0.1035714612 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
11 Hb_004738_090 0.1063071162 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001780_060 0.1069095494 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
13 Hb_000500_310 0.1101432335 - - -
14 Hb_007178_010 0.1144153346 - - pseudo-hevein [Hevea brasiliensis]
15 Hb_003018_180 0.1162288398 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
16 Hb_027751_020 0.1164826963 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
17 Hb_005730_020 0.1167580002 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
18 Hb_000603_200 0.1295949982 - - PREDICTED: myosin-15 [Jatropha curcas]
19 Hb_007810_040 0.1302737972 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
20 Hb_001140_160 0.1305715501 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_004545_150 Hb_004545_150 Hb_010931_100 Hb_010931_100 Hb_004545_150--Hb_010931_100 Hb_002609_260 Hb_002609_260 Hb_004545_150--Hb_002609_260 Hb_002989_080 Hb_002989_080 Hb_004545_150--Hb_002989_080 Hb_000264_190 Hb_000264_190 Hb_004545_150--Hb_000264_190 Hb_005488_100 Hb_005488_100 Hb_004545_150--Hb_005488_100 Hb_000563_540 Hb_000563_540 Hb_004545_150--Hb_000563_540 Hb_010931_100--Hb_000264_190 Hb_010931_100--Hb_002609_260 Hb_010931_100--Hb_000563_540 Hb_010931_100--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_010931_100--Hb_027751_020 Hb_002609_260--Hb_000264_190 Hb_005730_020 Hb_005730_020 Hb_002609_260--Hb_005730_020 Hb_002609_260--Hb_005488_100 Hb_002609_260--Hb_027751_020 Hb_002609_260--Hb_000563_540 Hb_002843_160 Hb_002843_160 Hb_002989_080--Hb_002843_160 Hb_003906_110 Hb_003906_110 Hb_002989_080--Hb_003906_110 Hb_000603_200 Hb_000603_200 Hb_002989_080--Hb_000603_200 Hb_007178_010 Hb_007178_010 Hb_002989_080--Hb_007178_010 Hb_002232_180 Hb_002232_180 Hb_002989_080--Hb_002232_180 Hb_000264_190--Hb_000563_540 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220 Hb_002067_160 Hb_002067_160 Hb_005488_100--Hb_002067_160 Hb_005488_100--Hb_007178_010 Hb_005488_100--Hb_000264_190 Hb_005488_100--Hb_002232_180 Hb_000563_540--Hb_027751_020 Hb_000563_540--Hb_005730_020 Hb_000571_070 Hb_000571_070 Hb_000563_540--Hb_000571_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2896.79 24.5818 6.203 48.3366 1790.32 1736.78
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1720.04 705.869 1598.5 140.077 18.2016

CAGE analysis