Hb_004545_160

Information

Type -
Description -
Location Contig4545: 184718-186330
Sequence    

Annotation

kegg
ID rcu:RCOM_1429810
description Histidine-containing phosphotransfer protein, putative (EC:1.3.1.74)
nr
ID XP_002512314.1
description Histidine-containing phosphotransfer protein, putative [Ricinus communis]
swissprot
ID Q9ZNV9
description Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1
trembl
ID B9REZ5
description Histidine-containing phosphotransfer protein, putative OS=Ricinus communis GN=RCOM_1429810 PE=4 SV=1
Gene Ontology
ID GO:0005622
description histidine-containing phosphotransfer protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43402: 184487-186356
cDNA
(Sanger)
(ID:Location)		 023_P11.ab1: 184744-186356 , 029_M22.ab1: 184649-186136 , 030_E01.ab1: 184645-186290 , 031_D01.ab1: 184602-186136 , 034_H21.ab1: 184668-186356 , 043_F09.ab1: 184530-186190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_160 0.0 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
2 Hb_007625_020 0.054791647 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
3 Hb_012305_060 0.0873137222 - - protein translocase, putative [Ricinus communis]
4 Hb_007451_030 0.1072711194 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
5 Hb_000366_100 0.1196740485 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
6 Hb_012395_100 0.1207072295 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
7 Hb_003057_050 0.1208153169 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
8 Hb_001104_120 0.1224417619 - - -
9 Hb_073973_110 0.1251492718 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
10 Hb_001754_150 0.1255020005 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
11 Hb_036369_010 0.1274570058 - - -
12 Hb_027472_090 0.127548705 - - -
13 Hb_002518_250 0.1278123479 - - conserved hypothetical protein 10 [Hevea brasiliensis]
14 Hb_000617_320 0.1287807107 - - 40S ribosomal protein S21B [Hevea brasiliensis]
15 Hb_000175_520 0.1298871375 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_001019_090 0.1312336073 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
17 Hb_001804_040 0.1316707002 - - conserved hypothetical protein [Ricinus communis]
18 Hb_025246_010 0.1317560571 - - -
19 Hb_001437_040 0.1327146708 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
20 Hb_004204_030 0.1332865527 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_004545_160 Hb_004545_160 Hb_007625_020 Hb_007625_020 Hb_004545_160--Hb_007625_020 Hb_012305_060 Hb_012305_060 Hb_004545_160--Hb_012305_060 Hb_007451_030 Hb_007451_030 Hb_004545_160--Hb_007451_030 Hb_000366_100 Hb_000366_100 Hb_004545_160--Hb_000366_100 Hb_012395_100 Hb_012395_100 Hb_004545_160--Hb_012395_100 Hb_003057_050 Hb_003057_050 Hb_004545_160--Hb_003057_050 Hb_007625_020--Hb_012305_060 Hb_007625_020--Hb_007451_030 Hb_007625_020--Hb_000366_100 Hb_007992_030 Hb_007992_030 Hb_007625_020--Hb_007992_030 Hb_000752_060 Hb_000752_060 Hb_007625_020--Hb_000752_060 Hb_000193_230 Hb_000193_230 Hb_012305_060--Hb_000193_230 Hb_000078_030 Hb_000078_030 Hb_012305_060--Hb_000078_030 Hb_000284_010 Hb_000284_010 Hb_012305_060--Hb_000284_010 Hb_012305_060--Hb_007451_030 Hb_007451_030--Hb_000193_230 Hb_001804_040 Hb_001804_040 Hb_007451_030--Hb_001804_040 Hb_000680_150 Hb_000680_150 Hb_007451_030--Hb_000680_150 Hb_000189_530 Hb_000189_530 Hb_000366_100--Hb_000189_530 Hb_036369_010 Hb_036369_010 Hb_000366_100--Hb_036369_010 Hb_023675_010 Hb_023675_010 Hb_000366_100--Hb_023675_010 Hb_000366_100--Hb_000752_060 Hb_000617_320 Hb_000617_320 Hb_000366_100--Hb_000617_320 Hb_008016_010 Hb_008016_010 Hb_000366_100--Hb_008016_010 Hb_000175_520 Hb_000175_520 Hb_012395_100--Hb_000175_520 Hb_001248_020 Hb_001248_020 Hb_012395_100--Hb_001248_020 Hb_012395_100--Hb_023675_010 Hb_012395_100--Hb_036369_010 Hb_004852_020 Hb_004852_020 Hb_012395_100--Hb_004852_020 Hb_025246_010 Hb_025246_010 Hb_003057_050--Hb_025246_010 Hb_004607_140 Hb_004607_140 Hb_003057_050--Hb_004607_140 Hb_017895_050 Hb_017895_050 Hb_003057_050--Hb_017895_050 Hb_004117_290 Hb_004117_290 Hb_003057_050--Hb_004117_290 Hb_003057_050--Hb_000617_320 Hb_000479_180 Hb_000479_180 Hb_003057_050--Hb_000479_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.077 8.52487 17.4316 12.9364 102.47 124.468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
181.11 173.861 45.5329 7.65641 4.63858

CAGE analysis