Hb_004551_010

Information

Type -
Description -
Location Contig4551: 36169-38032
Sequence    

Annotation

kegg
ID rcu:RCOM_0905390
description tryptophan synthase beta chain, putative (EC:1.3.1.74)
nr
ID XP_002518519.1
description tryptophan synthase beta chain, putative [Ricinus communis]
swissprot
ID O50046
description Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1
trembl
ID B9RXQ0
description Tryptophan synthase beta chain, putative OS=Ricinus communis GN=RCOM_0905390 PE=3 SV=1
Gene Ontology
ID GO:0004834
description tryptophan synthase beta chain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43414: 36364-37978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004551_010 0.0 - - tryptophan synthase beta chain, putative [Ricinus communis]
2 Hb_031266_020 0.0847420686 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
3 Hb_000134_260 0.1080446304 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_009252_090 0.1135467019 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_001660_080 0.1206352031 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
6 Hb_002374_200 0.1215099016 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
7 Hb_000035_140 0.1219061013 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
8 Hb_000592_070 0.1255418089 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
9 Hb_000069_530 0.1330963245 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
10 Hb_077694_010 0.1388936627 - - uncharacterized protein LOC100305624 [Glycine max]
11 Hb_004712_090 0.1391588611 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
12 Hb_155896_010 0.1445442282 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
13 Hb_000251_170 0.1454529271 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
14 Hb_000856_230 0.1457624165 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
15 Hb_000256_180 0.1477843676 - - PREDICTED: uncharacterized protein LOC105637589 [Jatropha curcas]
16 Hb_005381_010 0.1482264875 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
17 Hb_007919_070 0.1485790137 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
18 Hb_014700_020 0.1492325062 - - tryptophan synthase beta chain, putative [Ricinus communis]
19 Hb_116420_050 0.1507155281 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
20 Hb_003060_150 0.1511714521 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004551_010 Hb_004551_010 Hb_031266_020 Hb_031266_020 Hb_004551_010--Hb_031266_020 Hb_000134_260 Hb_000134_260 Hb_004551_010--Hb_000134_260 Hb_009252_090 Hb_009252_090 Hb_004551_010--Hb_009252_090 Hb_001660_080 Hb_001660_080 Hb_004551_010--Hb_001660_080 Hb_002374_200 Hb_002374_200 Hb_004551_010--Hb_002374_200 Hb_000035_140 Hb_000035_140 Hb_004551_010--Hb_000035_140 Hb_000592_070 Hb_000592_070 Hb_031266_020--Hb_000592_070 Hb_031266_020--Hb_009252_090 Hb_002048_100 Hb_002048_100 Hb_031266_020--Hb_002048_100 Hb_002133_010 Hb_002133_010 Hb_031266_020--Hb_002133_010 Hb_031266_020--Hb_000134_260 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_000134_260--Hb_002374_200 Hb_011918_030 Hb_011918_030 Hb_000134_260--Hb_011918_030 Hb_000134_260--Hb_000035_140 Hb_012400_020 Hb_012400_020 Hb_009252_090--Hb_012400_020 Hb_009252_090--Hb_000592_070 Hb_000069_530 Hb_000069_530 Hb_009252_090--Hb_000069_530 Hb_003060_150 Hb_003060_150 Hb_009252_090--Hb_003060_150 Hb_005381_010 Hb_005381_010 Hb_001660_080--Hb_005381_010 Hb_000836_420 Hb_000836_420 Hb_001660_080--Hb_000836_420 Hb_121540_010 Hb_121540_010 Hb_001660_080--Hb_121540_010 Hb_001660_080--Hb_003060_150 Hb_001660_080--Hb_000035_140 Hb_189208_060 Hb_189208_060 Hb_001660_080--Hb_189208_060 Hb_002400_020 Hb_002400_020 Hb_002374_200--Hb_002400_020 Hb_000454_080 Hb_000454_080 Hb_002374_200--Hb_000454_080 Hb_002374_200--Hb_001660_080 Hb_000322_160 Hb_000322_160 Hb_002374_200--Hb_000322_160 Hb_115962_010 Hb_115962_010 Hb_000035_140--Hb_115962_010 Hb_000035_140--Hb_189208_060 Hb_001160_050 Hb_001160_050 Hb_000035_140--Hb_001160_050 Hb_012496_020 Hb_012496_020 Hb_000035_140--Hb_012496_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.70171 18.5469 4.48143 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0314462 0.247395 0.185879 0.681433 1.34533

CAGE analysis