Hb_004551_020

Information

Type -
Description -
Location Contig4551: 40371-47197
Sequence    

Annotation

kegg
ID rcu:RCOM_0905380
description hypothetical protein
nr
ID XP_012091393.1
description PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
swissprot
ID Q0WPF2
description Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana GN=PCFS4 PE=1 SV=1
trembl
ID A0A067JAF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21252 PE=4 SV=1
Gene Ontology
ID GO:0044424
description polyadenylation and cleavage factor homolog 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43415: 42117-43618 , PASA_asmbl_43416: 43668-44163 , PASA_asmbl_43417: 44204-46625 , PASA_asmbl_43418: 46698-47003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004551_020 0.0 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
2 Hb_012490_010 0.0624631679 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
3 Hb_000428_030 0.0669221797 - - hypothetical protein RCOM_1520720 [Ricinus communis]
4 Hb_008686_020 0.0684501666 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
5 Hb_002078_470 0.0715625517 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
6 Hb_007012_040 0.0782262195 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
7 Hb_000035_100 0.0786514597 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_013358_060 0.078961666 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
9 Hb_116349_130 0.078996061 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
10 Hb_005408_030 0.0794552146 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
11 Hb_004696_070 0.0806316984 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
12 Hb_021596_010 0.0812402241 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
13 Hb_003939_060 0.0820657825 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003124_270 0.0862808247 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
15 Hb_000331_100 0.0863197388 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
16 Hb_002928_190 0.0868871344 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
17 Hb_001951_100 0.0877795592 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
18 Hb_000200_110 0.0886131502 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
19 Hb_000367_020 0.0888890556 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
20 Hb_000170_100 0.0900019252 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]

Gene co-expression network

sample Hb_004551_020 Hb_004551_020 Hb_012490_010 Hb_012490_010 Hb_004551_020--Hb_012490_010 Hb_000428_030 Hb_000428_030 Hb_004551_020--Hb_000428_030 Hb_008686_020 Hb_008686_020 Hb_004551_020--Hb_008686_020 Hb_002078_470 Hb_002078_470 Hb_004551_020--Hb_002078_470 Hb_007012_040 Hb_007012_040 Hb_004551_020--Hb_007012_040 Hb_000035_100 Hb_000035_100 Hb_004551_020--Hb_000035_100 Hb_004696_070 Hb_004696_070 Hb_012490_010--Hb_004696_070 Hb_012490_010--Hb_008686_020 Hb_002928_190 Hb_002928_190 Hb_012490_010--Hb_002928_190 Hb_020805_150 Hb_020805_150 Hb_012490_010--Hb_020805_150 Hb_000170_100 Hb_000170_100 Hb_012490_010--Hb_000170_100 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_000428_030--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_000428_030--Hb_000331_100 Hb_008165_020 Hb_008165_020 Hb_000428_030--Hb_008165_020 Hb_000200_110 Hb_000200_110 Hb_000428_030--Hb_000200_110 Hb_002918_320 Hb_002918_320 Hb_008686_020--Hb_002918_320 Hb_001951_100 Hb_001951_100 Hb_008686_020--Hb_001951_100 Hb_008686_020--Hb_002928_190 Hb_000367_020 Hb_000367_020 Hb_008686_020--Hb_000367_020 Hb_013358_060 Hb_013358_060 Hb_002078_470--Hb_013358_060 Hb_003124_270 Hb_003124_270 Hb_002078_470--Hb_003124_270 Hb_143629_020 Hb_143629_020 Hb_002078_470--Hb_143629_020 Hb_004586_090 Hb_004586_090 Hb_002078_470--Hb_004586_090 Hb_007012_040--Hb_003124_270 Hb_004884_090 Hb_004884_090 Hb_007012_040--Hb_004884_090 Hb_171554_040 Hb_171554_040 Hb_007012_040--Hb_171554_040 Hb_000154_130 Hb_000154_130 Hb_007012_040--Hb_000154_130 Hb_000445_130 Hb_000445_130 Hb_007012_040--Hb_000445_130 Hb_116349_130 Hb_116349_130 Hb_000035_100--Hb_116349_130 Hb_033312_130 Hb_033312_130 Hb_000035_100--Hb_033312_130 Hb_000030_140 Hb_000030_140 Hb_000035_100--Hb_000030_140 Hb_000035_100--Hb_008165_020 Hb_000173_190 Hb_000173_190 Hb_000035_100--Hb_000173_190 Hb_003929_210 Hb_003929_210 Hb_000035_100--Hb_003929_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02766 9.04029 4.44325 3.59308 2.09222 2.74124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1431 2.16262 2.28439 4.58274 6.49818

CAGE analysis