Hb_004553_020

Information

Type -
Description -
Location Contig4553: 26061-39333
Sequence    

Annotation

kegg
ID rcu:RCOM_1111390
description hypothetical protein
nr
ID XP_012066282.1
description PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
swissprot
ID Q8WV22
description Non-structural maintenance of chromosomes element 1 homolog OS=Homo sapiens GN=NSMCE1 PE=1 SV=5
trembl
ID A0A067L363
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23843 PE=4 SV=1
Gene Ontology
ID GO:0030915
description non-structural maintenance of chromosomes element 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004553_020 0.0 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
2 Hb_000362_120 0.1698788466 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_005188_090 0.1793555496 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
4 Hb_005043_010 0.1854782707 - - calcium ion binding protein, putative [Ricinus communis]
5 Hb_000172_560 0.1861371427 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
6 Hb_001616_120 0.1878825413 - - -
7 Hb_005701_010 0.1905986584 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
8 Hb_000094_130 0.2002540161 - - PREDICTED: random slug protein 5 [Jatropha curcas]
9 Hb_001222_050 0.200965575 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
10 Hb_000085_080 0.2047696699 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
11 Hb_001780_120 0.2052247761 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
12 Hb_001277_090 0.2058801666 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
13 Hb_007765_020 0.2059041629 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
14 Hb_005548_010 0.2085359094 - - PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]
15 Hb_000690_070 0.2088076115 - - -
16 Hb_004724_230 0.2090739328 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
17 Hb_001035_070 0.2091244725 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
18 Hb_000422_120 0.2095353713 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
19 Hb_001523_020 0.2103177367 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
20 Hb_004429_070 0.2150098636 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]

Gene co-expression network

sample Hb_004553_020 Hb_004553_020 Hb_000362_120 Hb_000362_120 Hb_004553_020--Hb_000362_120 Hb_005188_090 Hb_005188_090 Hb_004553_020--Hb_005188_090 Hb_005043_010 Hb_005043_010 Hb_004553_020--Hb_005043_010 Hb_000172_560 Hb_000172_560 Hb_004553_020--Hb_000172_560 Hb_001616_120 Hb_001616_120 Hb_004553_020--Hb_001616_120 Hb_005701_010 Hb_005701_010 Hb_004553_020--Hb_005701_010 Hb_002496_040 Hb_002496_040 Hb_000362_120--Hb_002496_040 Hb_002205_190 Hb_002205_190 Hb_000362_120--Hb_002205_190 Hb_001454_190 Hb_001454_190 Hb_000362_120--Hb_001454_190 Hb_012325_020 Hb_012325_020 Hb_000362_120--Hb_012325_020 Hb_000340_390 Hb_000340_390 Hb_000362_120--Hb_000340_390 Hb_007416_270 Hb_007416_270 Hb_000362_120--Hb_007416_270 Hb_005188_090--Hb_000172_560 Hb_002603_160 Hb_002603_160 Hb_005188_090--Hb_002603_160 Hb_000236_140 Hb_000236_140 Hb_005188_090--Hb_000236_140 Hb_005188_090--Hb_005043_010 Hb_005188_090--Hb_007416_270 Hb_003687_100 Hb_003687_100 Hb_005188_090--Hb_003687_100 Hb_000563_550 Hb_000563_550 Hb_005043_010--Hb_000563_550 Hb_005043_010--Hb_007416_270 Hb_005043_010--Hb_000236_140 Hb_005043_010--Hb_000172_560 Hb_000705_240 Hb_000705_240 Hb_005043_010--Hb_000705_240 Hb_000172_560--Hb_000236_140 Hb_000172_560--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000172_560--Hb_000479_130 Hb_001189_050 Hb_001189_050 Hb_000172_560--Hb_001189_050 Hb_000172_560--Hb_003687_100 Hb_001616_120--Hb_005701_010 Hb_000122_130 Hb_000122_130 Hb_001616_120--Hb_000122_130 Hb_000069_460 Hb_000069_460 Hb_001616_120--Hb_000069_460 Hb_023292_010 Hb_023292_010 Hb_001616_120--Hb_023292_010 Hb_006602_010 Hb_006602_010 Hb_001616_120--Hb_006602_010 Hb_022148_010 Hb_022148_010 Hb_001616_120--Hb_022148_010 Hb_005701_010--Hb_000563_550 Hb_005701_010--Hb_002603_160 Hb_002551_020 Hb_002551_020 Hb_005701_010--Hb_002551_020 Hb_005701_010--Hb_005188_090 Hb_005701_010--Hb_000069_460 Hb_003147_050 Hb_003147_050 Hb_005701_010--Hb_003147_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.217408 0.0896306 0.131324 0.107768 0.164182 0.699142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.516599 0.250074 1.92066 0.751087 0.259019

CAGE analysis