Hb_004558_060

Information

Type transcription factor
Description TF Family: HSF
Location Contig4558: 88372-89678
Sequence    

Annotation

kegg
ID rcu:RCOM_1590070
description DNA binding protein, putative
nr
ID XP_012068333.1
description PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
swissprot
ID Q9C635
description Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1
trembl
ID A0A067LCE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16126 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor b-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43431: 88707-89467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004558_060 0.0 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
2 Hb_001369_190 0.0777663077 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
3 Hb_009736_020 0.0797626688 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
4 Hb_002171_020 0.0843010043 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
5 Hb_005648_020 0.0856641373 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
6 Hb_002518_020 0.091310809 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
7 Hb_002918_270 0.1001108891 - - PREDICTED: protein E6-like [Populus euphratica]
8 Hb_003607_080 0.1008413176 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
9 Hb_178049_010 0.1015272414 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
10 Hb_005215_050 0.1044284274 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
11 Hb_154038_040 0.1072388372 - - nutrient reservoir, putative [Ricinus communis]
12 Hb_035995_010 0.1084381757 - - -
13 Hb_001769_070 0.1142184019 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
14 Hb_003466_010 0.1158375056 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
15 Hb_006088_020 0.1185822157 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_000849_030 0.1191552592 - - PREDICTED: fimbrin-2 [Jatropha curcas]
17 Hb_008021_050 0.1200449023 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000076_280 0.1205298898 - - PREDICTED: pectinesterase-like [Populus euphratica]
19 Hb_000329_720 0.122816316 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
20 Hb_000395_310 0.123173929 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004558_060 Hb_004558_060 Hb_001369_190 Hb_001369_190 Hb_004558_060--Hb_001369_190 Hb_009736_020 Hb_009736_020 Hb_004558_060--Hb_009736_020 Hb_002171_020 Hb_002171_020 Hb_004558_060--Hb_002171_020 Hb_005648_020 Hb_005648_020 Hb_004558_060--Hb_005648_020 Hb_002518_020 Hb_002518_020 Hb_004558_060--Hb_002518_020 Hb_002918_270 Hb_002918_270 Hb_004558_060--Hb_002918_270 Hb_006088_020 Hb_006088_020 Hb_001369_190--Hb_006088_020 Hb_001369_190--Hb_002918_270 Hb_003607_080 Hb_003607_080 Hb_001369_190--Hb_003607_080 Hb_005215_050 Hb_005215_050 Hb_001369_190--Hb_005215_050 Hb_000849_030 Hb_000849_030 Hb_001369_190--Hb_000849_030 Hb_009736_020--Hb_005648_020 Hb_009736_020--Hb_002171_020 Hb_009736_020--Hb_002918_270 Hb_178049_010 Hb_178049_010 Hb_009736_020--Hb_178049_010 Hb_009252_080 Hb_009252_080 Hb_009736_020--Hb_009252_080 Hb_009189_100 Hb_009189_100 Hb_002171_020--Hb_009189_100 Hb_000329_720 Hb_000329_720 Hb_002171_020--Hb_000329_720 Hb_002171_020--Hb_178049_010 Hb_000005_360 Hb_000005_360 Hb_002171_020--Hb_000005_360 Hb_015934_080 Hb_015934_080 Hb_002171_020--Hb_015934_080 Hb_003466_010 Hb_003466_010 Hb_005648_020--Hb_003466_010 Hb_005648_020--Hb_003607_080 Hb_003849_170 Hb_003849_170 Hb_005648_020--Hb_003849_170 Hb_000093_010 Hb_000093_010 Hb_005648_020--Hb_000093_010 Hb_170077_020 Hb_170077_020 Hb_005648_020--Hb_170077_020 Hb_005000_280 Hb_005000_280 Hb_002518_020--Hb_005000_280 Hb_001769_070 Hb_001769_070 Hb_002518_020--Hb_001769_070 Hb_000076_280 Hb_000076_280 Hb_002518_020--Hb_000076_280 Hb_002518_020--Hb_002171_020 Hb_000329_010 Hb_000329_010 Hb_002518_020--Hb_000329_010 Hb_050898_030 Hb_050898_030 Hb_002918_270--Hb_050898_030 Hb_001789_230 Hb_001789_230 Hb_002918_270--Hb_001789_230 Hb_002918_270--Hb_005648_020 Hb_015292_020 Hb_015292_020 Hb_002918_270--Hb_015292_020 Hb_002918_270--Hb_003466_010 Hb_012132_050 Hb_012132_050 Hb_002918_270--Hb_012132_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193847 1.54976 3.01632 9.88164 0.070008 0.0634514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.15651 2.28023

CAGE analysis