Hb_004563_010

Information

Type -
Description -
Location Contig4563: 29296-33532
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_002533395.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9T576
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0446110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43433: 32971-33525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004563_010 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_002336_050 0.0603037116 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_008195_090 0.0708605331 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012098_120 0.0798405228 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
5 Hb_003151_020 0.082468307 - - Ankyrin repeat family protein, putative [Theobroma cacao]
6 Hb_029991_010 0.0894436769 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
7 Hb_004607_110 0.0899499683 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
8 Hb_000803_080 0.0920869663 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_028491_010 0.0937408894 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
10 Hb_003162_060 0.0987222956 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
11 Hb_001472_150 0.0989039005 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
12 Hb_005532_030 0.0994232341 - - DNA binding protein, putative [Ricinus communis]
13 Hb_002073_130 0.1002940187 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
14 Hb_002805_280 0.1012498042 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
15 Hb_131466_010 0.1016950455 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
16 Hb_132880_010 0.1024551325 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
17 Hb_002387_010 0.1025364664 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
18 Hb_086300_010 0.1034135701 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_004807_010 0.1038859203 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
20 Hb_001141_100 0.1045765853 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004563_010 Hb_004563_010 Hb_002336_050 Hb_002336_050 Hb_004563_010--Hb_002336_050 Hb_008195_090 Hb_008195_090 Hb_004563_010--Hb_008195_090 Hb_012098_120 Hb_012098_120 Hb_004563_010--Hb_012098_120 Hb_003151_020 Hb_003151_020 Hb_004563_010--Hb_003151_020 Hb_029991_010 Hb_029991_010 Hb_004563_010--Hb_029991_010 Hb_004607_110 Hb_004607_110 Hb_004563_010--Hb_004607_110 Hb_005532_030 Hb_005532_030 Hb_002336_050--Hb_005532_030 Hb_008536_020 Hb_008536_020 Hb_002336_050--Hb_008536_020 Hb_006831_090 Hb_006831_090 Hb_002336_050--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_002336_050--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_002336_050--Hb_004032_280 Hb_002805_280 Hb_002805_280 Hb_008195_090--Hb_002805_280 Hb_008195_090--Hb_003151_020 Hb_008195_090--Hb_029991_010 Hb_002387_010 Hb_002387_010 Hb_008195_090--Hb_002387_010 Hb_033681_030 Hb_033681_030 Hb_008195_090--Hb_033681_030 Hb_004807_010 Hb_004807_010 Hb_012098_120--Hb_004807_010 Hb_005839_040 Hb_005839_040 Hb_012098_120--Hb_005839_040 Hb_185811_010 Hb_185811_010 Hb_012098_120--Hb_185811_010 Hb_000803_080 Hb_000803_080 Hb_012098_120--Hb_000803_080 Hb_001345_050 Hb_001345_050 Hb_012098_120--Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_012098_120--Hb_072771_010 Hb_001232_070 Hb_001232_070 Hb_003151_020--Hb_001232_070 Hb_002391_340 Hb_002391_340 Hb_003151_020--Hb_002391_340 Hb_001472_150 Hb_001472_150 Hb_003151_020--Hb_001472_150 Hb_006483_040 Hb_006483_040 Hb_003151_020--Hb_006483_040 Hb_000329_120 Hb_000329_120 Hb_003151_020--Hb_000329_120 Hb_131466_010 Hb_131466_010 Hb_029991_010--Hb_131466_010 Hb_029991_010--Hb_004607_110 Hb_001307_050 Hb_001307_050 Hb_029991_010--Hb_001307_050 Hb_028491_010 Hb_028491_010 Hb_029991_010--Hb_028491_010 Hb_000179_010 Hb_000179_010 Hb_029991_010--Hb_000179_010 Hb_000497_050 Hb_000497_050 Hb_029991_010--Hb_000497_050 Hb_004607_110--Hb_028491_010 Hb_001141_100 Hb_001141_100 Hb_004607_110--Hb_001141_100 Hb_004607_110--Hb_131466_010 Hb_001735_040 Hb_001735_040 Hb_004607_110--Hb_001735_040 Hb_004607_110--Hb_000803_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0256395 0.0255985 0.623035 0.915153 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0220704 1.71703

CAGE analysis