Hb_004566_050

Information

Type -
Description -
Location Contig4566: 134383-137874
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004566_050 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_111985_030 0.0004155078 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
3 Hb_001318_060 0.0170495656 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
4 Hb_003410_020 0.0211321311 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_034909_010 0.0212488903 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_010435_010 0.0256873886 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_071998_010 0.0494204194 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
8 Hb_011888_010 0.0533877396 - - Receptor like protein 46, putative [Theobroma cacao]
9 Hb_000417_330 0.0702538459 - - -
10 Hb_008576_010 0.0765060174 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_149253_010 0.0807343431 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
12 Hb_003943_060 0.0815190788 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
13 Hb_012438_020 0.0828448232 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_001383_040 0.0832515623 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
15 Hb_144813_010 0.0860104766 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
16 Hb_003582_050 0.0991693826 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
17 Hb_127835_030 0.1011246876 - - -
18 Hb_002836_030 0.1029431017 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
19 Hb_160879_010 0.1100932607 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
20 Hb_004553_010 0.1138425958 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_004566_050 Hb_004566_050 Hb_111985_030 Hb_111985_030 Hb_004566_050--Hb_111985_030 Hb_001318_060 Hb_001318_060 Hb_004566_050--Hb_001318_060 Hb_003410_020 Hb_003410_020 Hb_004566_050--Hb_003410_020 Hb_034909_010 Hb_034909_010 Hb_004566_050--Hb_034909_010 Hb_010435_010 Hb_010435_010 Hb_004566_050--Hb_010435_010 Hb_071998_010 Hb_071998_010 Hb_004566_050--Hb_071998_010 Hb_111985_030--Hb_001318_060 Hb_111985_030--Hb_003410_020 Hb_111985_030--Hb_034909_010 Hb_111985_030--Hb_010435_010 Hb_111985_030--Hb_071998_010 Hb_001318_060--Hb_010435_010 Hb_001318_060--Hb_003410_020 Hb_001318_060--Hb_034909_010 Hb_000417_330 Hb_000417_330 Hb_001318_060--Hb_000417_330 Hb_003410_020--Hb_034909_010 Hb_003410_020--Hb_071998_010 Hb_011888_010 Hb_011888_010 Hb_003410_020--Hb_011888_010 Hb_034909_010--Hb_071998_010 Hb_034909_010--Hb_011888_010 Hb_010435_010--Hb_000417_330 Hb_010435_010--Hb_003410_020 Hb_010435_010--Hb_034909_010 Hb_071998_010--Hb_011888_010 Hb_144813_010 Hb_144813_010 Hb_071998_010--Hb_144813_010 Hb_003582_050 Hb_003582_050 Hb_071998_010--Hb_003582_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0177518 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0228134

CAGE analysis