Hb_004567_010

Information

Type -
Description -
Location Contig4567: 13744-18097
Sequence    

Annotation

kegg
ID pxb:103961013
description ER lumen protein-retaining receptor
nr
ID XP_012085088.1
description PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
swissprot
ID Q8VWI1
description ER lumen protein-retaining receptor B OS=Arabidopsis thaliana GN=ERD2B PE=1 SV=1
trembl
ID A0A067K284
description ER lumen protein-retaining receptor OS=Jatropha curcas GN=JCGZ_17533 PE=3 SV=1
Gene Ontology
ID GO:0005789
description er lumen protein-retaining receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43438: 13791-18075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004567_010 0.0 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
2 Hb_002740_080 0.0922978429 - - flap endonuclease-1, putative [Ricinus communis]
3 Hb_003540_050 0.1014968901 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
4 Hb_000152_600 0.1085287494 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
5 Hb_005535_080 0.1092433907 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
6 Hb_000072_300 0.1120283973 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
7 Hb_000753_160 0.1138607605 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
8 Hb_000160_070 0.1141974011 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
9 Hb_000622_130 0.1194142979 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
10 Hb_081599_010 0.121415421 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000580_100 0.1214760103 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
12 Hb_003209_130 0.1244720485 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
13 Hb_007919_110 0.1260004912 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
14 Hb_001279_190 0.1268782186 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
15 Hb_005064_010 0.1271463944 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
16 Hb_001191_080 0.1274443573 - - protein with unknown function [Ricinus communis]
17 Hb_002615_070 0.1292942706 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
18 Hb_004064_040 0.1293825913 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
19 Hb_001677_200 0.1294915992 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000836_300 0.1302655358 - - caax prenyl protease ste24, putative [Ricinus communis]

Gene co-expression network

sample Hb_004567_010 Hb_004567_010 Hb_002740_080 Hb_002740_080 Hb_004567_010--Hb_002740_080 Hb_003540_050 Hb_003540_050 Hb_004567_010--Hb_003540_050 Hb_000152_600 Hb_000152_600 Hb_004567_010--Hb_000152_600 Hb_005535_080 Hb_005535_080 Hb_004567_010--Hb_005535_080 Hb_000072_300 Hb_000072_300 Hb_004567_010--Hb_000072_300 Hb_000753_160 Hb_000753_160 Hb_004567_010--Hb_000753_160 Hb_081599_010 Hb_081599_010 Hb_002740_080--Hb_081599_010 Hb_001279_190 Hb_001279_190 Hb_002740_080--Hb_001279_190 Hb_000160_070 Hb_000160_070 Hb_002740_080--Hb_000160_070 Hb_002740_080--Hb_000072_300 Hb_000815_300 Hb_000815_300 Hb_002740_080--Hb_000815_300 Hb_001227_120 Hb_001227_120 Hb_002740_080--Hb_001227_120 Hb_003540_050--Hb_000072_300 Hb_002686_080 Hb_002686_080 Hb_003540_050--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_003540_050--Hb_005064_010 Hb_001053_190 Hb_001053_190 Hb_003540_050--Hb_001053_190 Hb_003540_050--Hb_001279_190 Hb_003540_050--Hb_002740_080 Hb_000152_600--Hb_081599_010 Hb_005993_010 Hb_005993_010 Hb_000152_600--Hb_005993_010 Hb_000152_600--Hb_000072_300 Hb_019181_030 Hb_019181_030 Hb_000152_600--Hb_019181_030 Hb_000130_270 Hb_000130_270 Hb_000152_600--Hb_000130_270 Hb_000069_640 Hb_000069_640 Hb_000152_600--Hb_000069_640 Hb_003209_130 Hb_003209_130 Hb_005535_080--Hb_003209_130 Hb_005381_020 Hb_005381_020 Hb_005535_080--Hb_005381_020 Hb_002486_050 Hb_002486_050 Hb_005535_080--Hb_002486_050 Hb_000395_040 Hb_000395_040 Hb_005535_080--Hb_000395_040 Hb_000622_110 Hb_000622_110 Hb_005535_080--Hb_000622_110 Hb_007919_110 Hb_007919_110 Hb_005535_080--Hb_007919_110 Hb_000359_290 Hb_000359_290 Hb_000072_300--Hb_000359_290 Hb_000072_300--Hb_002686_080 Hb_000072_300--Hb_005064_010 Hb_002304_050 Hb_002304_050 Hb_000753_160--Hb_002304_050 Hb_001250_050 Hb_001250_050 Hb_000753_160--Hb_001250_050 Hb_000753_160--Hb_007919_110 Hb_003449_100 Hb_003449_100 Hb_000753_160--Hb_003449_100 Hb_002687_180 Hb_002687_180 Hb_000753_160--Hb_002687_180 Hb_000753_160--Hb_001279_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.8075 11.1531 33.4134 41.4431 12.5157 8.82591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.85607 16.968 6.7437 10.9388 12.7923

CAGE analysis