Hb_004567_090

Information

Type -
Description -
Location Contig4567: 55611-59503
Sequence    

Annotation

kegg
ID rcu:RCOM_1719360
description GPI-anchor transamidase, putative
nr
ID XP_012085083.1
description PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
swissprot
ID Q969N2
description GPI transamidase component PIG-T OS=Homo sapiens GN=PIGT PE=1 SV=1
trembl
ID A0A067JQY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17529 PE=4 SV=1
Gene Ontology
ID GO:0042765
description gpi transamidase component gpi16 subunit family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43449: 55696-56932 , PASA_asmbl_43450: 57238-59452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004567_090 0.0 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
2 Hb_004109_080 0.0402169936 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
3 Hb_002110_190 0.0566886542 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
4 Hb_007479_040 0.0567426026 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012498_010 0.0585877083 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
6 Hb_003411_040 0.0603635359 - - unnamed protein product [Coffea canephora]
7 Hb_054865_150 0.0627315119 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
8 Hb_007638_030 0.063035147 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
9 Hb_029243_030 0.0635905298 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
10 Hb_000792_010 0.0649382662 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
11 Hb_000138_100 0.0654583041 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
12 Hb_001500_140 0.0656911815 - - pelota, putative [Ricinus communis]
13 Hb_000340_530 0.0658529911 - - hypothetical protein VITISV_016664 [Vitis vinifera]
14 Hb_000111_290 0.0659987795 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
15 Hb_001999_310 0.0661509686 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
16 Hb_010964_040 0.0670005022 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
17 Hb_011386_010 0.0672503491 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_001876_050 0.0672834011 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
19 Hb_001417_030 0.0673451293 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
20 Hb_000003_590 0.0687671808 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004567_090 Hb_004567_090 Hb_004109_080 Hb_004109_080 Hb_004567_090--Hb_004109_080 Hb_002110_190 Hb_002110_190 Hb_004567_090--Hb_002110_190 Hb_007479_040 Hb_007479_040 Hb_004567_090--Hb_007479_040 Hb_012498_010 Hb_012498_010 Hb_004567_090--Hb_012498_010 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_054865_150 Hb_054865_150 Hb_004567_090--Hb_054865_150 Hb_004109_080--Hb_012498_010 Hb_005291_050 Hb_005291_050 Hb_004109_080--Hb_005291_050 Hb_000340_530 Hb_000340_530 Hb_004109_080--Hb_000340_530 Hb_002263_020 Hb_002263_020 Hb_004109_080--Hb_002263_020 Hb_000406_200 Hb_000406_200 Hb_004109_080--Hb_000406_200 Hb_002110_190--Hb_007479_040 Hb_011037_030 Hb_011037_030 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_002110_190--Hb_054865_150 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120 Hb_000028_480 Hb_000028_480 Hb_007479_040--Hb_000028_480 Hb_002044_150 Hb_002044_150 Hb_007479_040--Hb_002044_150 Hb_002518_260 Hb_002518_260 Hb_007479_040--Hb_002518_260 Hb_004254_090 Hb_004254_090 Hb_007479_040--Hb_004254_090 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_001814_030 Hb_001814_030 Hb_003411_040--Hb_001814_030 Hb_000792_010 Hb_000792_010 Hb_003411_040--Hb_000792_010 Hb_000592_030 Hb_000592_030 Hb_003411_040--Hb_000592_030 Hb_000111_290 Hb_000111_290 Hb_003411_040--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003411_040--Hb_001417_030 Hb_054865_150--Hb_011037_030 Hb_054865_150--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_054865_150--Hb_000172_290 Hb_000254_090 Hb_000254_090 Hb_054865_150--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.64208 8.52866 6.71882 11.4786 8.80244 12.3541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.38298 10.5393 10.64 12.5376 11.705

CAGE analysis