Hb_004567_120

Information

Type -
Description -
Location Contig4567: 65635-67733
Sequence    

Annotation

kegg
ID rcu:RCOM_1720260
description 60S ribosomal protein L13a, putative
nr
ID XP_012085110.1
description PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
swissprot
ID Q9SVR0
description 60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1
trembl
ID A0A067JUB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17546 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 60s ribosomal protein l13a-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43451: 65691-67758
cDNA
(Sanger)
(ID:Location)		 003_E09.ab1: 65891-67758 , 005_O22.ab1: 65877-67740 , 050_O16.ab1: 66740-67750

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004567_120 0.0 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
2 Hb_004216_050 0.0523082649 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
3 Hb_006478_150 0.0623101624 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
4 Hb_002676_090 0.0639313912 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
5 Hb_005568_120 0.0669031551 - - Prephenate dehydratase [Hevea brasiliensis]
6 Hb_011644_030 0.0687895251 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
7 Hb_000136_170 0.0715484299 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
8 Hb_033642_080 0.0725640189 - - V-type proton ATPase subunit E [Hevea brasiliensis]
9 Hb_010068_020 0.0751385901 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
10 Hb_000384_100 0.0752498426 - - hydrolase, putative [Ricinus communis]
11 Hb_001085_120 0.0759969517 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
12 Hb_000265_050 0.0775613371 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
13 Hb_005883_100 0.0798611396 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
14 Hb_086639_090 0.08267399 - - 60S ribosomal protein L7a, putative [Ricinus communis]
15 Hb_006541_010 0.0832371155 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
16 Hb_005305_150 0.084496109 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
17 Hb_000441_110 0.0853754323 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
18 Hb_004767_080 0.0855789707 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
19 Hb_001545_170 0.0855905798 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
20 Hb_000920_110 0.0870762144 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]

Gene co-expression network

sample Hb_004567_120 Hb_004567_120 Hb_004216_050 Hb_004216_050 Hb_004567_120--Hb_004216_050 Hb_006478_150 Hb_006478_150 Hb_004567_120--Hb_006478_150 Hb_002676_090 Hb_002676_090 Hb_004567_120--Hb_002676_090 Hb_005568_120 Hb_005568_120 Hb_004567_120--Hb_005568_120 Hb_011644_030 Hb_011644_030 Hb_004567_120--Hb_011644_030 Hb_000136_170 Hb_000136_170 Hb_004567_120--Hb_000136_170 Hb_005305_150 Hb_005305_150 Hb_004216_050--Hb_005305_150 Hb_004216_050--Hb_006478_150 Hb_010068_020 Hb_010068_020 Hb_004216_050--Hb_010068_020 Hb_000496_120 Hb_000496_120 Hb_004216_050--Hb_000496_120 Hb_004767_080 Hb_004767_080 Hb_004216_050--Hb_004767_080 Hb_033642_080 Hb_033642_080 Hb_006478_150--Hb_033642_080 Hb_091433_020 Hb_091433_020 Hb_006478_150--Hb_091433_020 Hb_000417_360 Hb_000417_360 Hb_006478_150--Hb_000417_360 Hb_000441_110 Hb_000441_110 Hb_006478_150--Hb_000441_110 Hb_002676_090--Hb_005568_120 Hb_004143_150 Hb_004143_150 Hb_002676_090--Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_002676_090--Hb_004899_370 Hb_000107_160 Hb_000107_160 Hb_002676_090--Hb_000107_160 Hb_001545_170 Hb_001545_170 Hb_002676_090--Hb_001545_170 Hb_028515_010 Hb_028515_010 Hb_005568_120--Hb_028515_010 Hb_011173_050 Hb_011173_050 Hb_005568_120--Hb_011173_050 Hb_012114_040 Hb_012114_040 Hb_005568_120--Hb_012114_040 Hb_000373_130 Hb_000373_130 Hb_005568_120--Hb_000373_130 Hb_006541_010 Hb_006541_010 Hb_011644_030--Hb_006541_010 Hb_003994_040 Hb_003994_040 Hb_011644_030--Hb_003994_040 Hb_026048_070 Hb_026048_070 Hb_011644_030--Hb_026048_070 Hb_011644_030--Hb_000136_170 Hb_000364_030 Hb_000364_030 Hb_011644_030--Hb_000364_030 Hb_002713_070 Hb_002713_070 Hb_000136_170--Hb_002713_070 Hb_000134_070 Hb_000134_070 Hb_000136_170--Hb_000134_070 Hb_001505_020 Hb_001505_020 Hb_000136_170--Hb_001505_020 Hb_003623_050 Hb_003623_050 Hb_000136_170--Hb_003623_050 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.4158 37.795 38.9399 58.1529 52.8623 78.1252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.637 231.332 118.443 93.6698 64.384

CAGE analysis