Hb_004570_020

Information

Type -
Description -
Location Contig4570: 31679-40286
Sequence    

Annotation

kegg
ID rcu:RCOM_1186670
description hypothetical protein
nr
ID XP_012076195.1
description PREDICTED: protein TIC 100 [Jatropha curcas]
swissprot
ID Q8LPR8
description Protein TIC 100 OS=Arabidopsis thaliana GN=TIC100 PE=1 SV=1
trembl
ID A0A067KE32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11255 PE=4 SV=1
Gene Ontology
ID GO:0009535
description protein tic 100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43487: 31739-39939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004570_020 0.0 - - PREDICTED: protein TIC 100 [Jatropha curcas]
2 Hb_002893_150 0.079931394 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
3 Hb_001235_200 0.093591751 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000531_090 0.0944841997 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
5 Hb_007307_020 0.0946339593 - - DNA binding protein, putative [Ricinus communis]
6 Hb_012098_110 0.094720081 - - Ribonuclease 3 [Gossypium arboreum]
7 Hb_002235_160 0.0957082967 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
8 Hb_001599_030 0.0971096773 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
9 Hb_007904_120 0.1017474246 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
10 Hb_125092_020 0.1028552839 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
11 Hb_010423_020 0.1044830966 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
12 Hb_000714_050 0.104803864 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
13 Hb_004218_240 0.1060665894 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
14 Hb_000010_180 0.1068788954 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
15 Hb_000510_200 0.1070726942 - - nucleotide binding protein, putative [Ricinus communis]
16 Hb_007262_020 0.1095855603 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
17 Hb_000093_080 0.1096555018 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
18 Hb_006449_050 0.1097100349 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
19 Hb_002043_170 0.1102136414 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
20 Hb_003544_100 0.1104828333 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]

Gene co-expression network

sample Hb_004570_020 Hb_004570_020 Hb_002893_150 Hb_002893_150 Hb_004570_020--Hb_002893_150 Hb_001235_200 Hb_001235_200 Hb_004570_020--Hb_001235_200 Hb_000531_090 Hb_000531_090 Hb_004570_020--Hb_000531_090 Hb_007307_020 Hb_007307_020 Hb_004570_020--Hb_007307_020 Hb_012098_110 Hb_012098_110 Hb_004570_020--Hb_012098_110 Hb_002235_160 Hb_002235_160 Hb_004570_020--Hb_002235_160 Hb_002893_150--Hb_000531_090 Hb_000789_080 Hb_000789_080 Hb_002893_150--Hb_000789_080 Hb_002893_150--Hb_001235_200 Hb_000510_200 Hb_000510_200 Hb_002893_150--Hb_000510_200 Hb_125092_020 Hb_125092_020 Hb_002893_150--Hb_125092_020 Hb_000436_040 Hb_000436_040 Hb_002893_150--Hb_000436_040 Hb_001599_030 Hb_001599_030 Hb_001235_200--Hb_001599_030 Hb_000714_050 Hb_000714_050 Hb_001235_200--Hb_000714_050 Hb_000035_040 Hb_000035_040 Hb_001235_200--Hb_000035_040 Hb_010381_060 Hb_010381_060 Hb_001235_200--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_001235_200--Hb_000320_200 Hb_007558_120 Hb_007558_120 Hb_001235_200--Hb_007558_120 Hb_000531_090--Hb_125092_020 Hb_000531_090--Hb_000789_080 Hb_000531_090--Hb_000035_040 Hb_000343_210 Hb_000343_210 Hb_000531_090--Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000531_090--Hb_147737_010 Hb_048476_180 Hb_048476_180 Hb_007307_020--Hb_048476_180 Hb_001143_250 Hb_001143_250 Hb_007307_020--Hb_001143_250 Hb_007307_020--Hb_001599_030 Hb_000300_440 Hb_000300_440 Hb_007307_020--Hb_000300_440 Hb_027380_140 Hb_027380_140 Hb_007307_020--Hb_027380_140 Hb_007307_020--Hb_002235_160 Hb_007262_020 Hb_007262_020 Hb_012098_110--Hb_007262_020 Hb_007026_030 Hb_007026_030 Hb_012098_110--Hb_007026_030 Hb_007904_120 Hb_007904_120 Hb_012098_110--Hb_007904_120 Hb_012098_110--Hb_010381_060 Hb_012098_110--Hb_000714_050 Hb_000498_010 Hb_000498_010 Hb_012098_110--Hb_000498_010 Hb_000160_290 Hb_000160_290 Hb_002235_160--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_002235_160--Hb_000796_190 Hb_117552_010 Hb_117552_010 Hb_002235_160--Hb_117552_010 Hb_002235_160--Hb_001235_200 Hb_003124_130 Hb_003124_130 Hb_002235_160--Hb_003124_130 Hb_002235_160--Hb_147737_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.5508 20.1335 22.9331 9.9018 34.309 56.2479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6635 10.0772 20.2843 24.8913 27.6137

CAGE analysis