Hb_004570_030

Information

Type -
Description -
Location Contig4570: 43931-51696
Sequence    

Annotation

kegg
ID rcu:RCOM_1186680
description hypothetical protein
nr
ID XP_002527453.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LK56
description Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2
trembl
ID B9SN84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1186680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004570_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007818_020 0.184199302 - - predicted protein [Physcomitrella patens]
3 Hb_007416_190 0.1918926729 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
4 Hb_011791_020 0.2223133439 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
5 Hb_004228_020 0.2256954269 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
6 Hb_011909_070 0.2303699954 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
7 Hb_002805_130 0.2330765313 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000465_480 0.2340462233 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
9 Hb_040255_010 0.2355998588 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
10 Hb_004336_040 0.2369425828 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
11 Hb_006663_040 0.2387557078 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
12 Hb_000080_170 0.2393283877 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
13 Hb_000094_320 0.2397338484 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
14 Hb_001027_010 0.2398796303 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0019s03720g [Populus trichocarpa]
15 Hb_011218_070 0.243641042 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_000832_320 0.2449496074 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
17 Hb_000920_250 0.2449572213 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_0655500 [Ricinus communis]
18 Hb_004032_040 0.2450861534 - - unknown [Medicago truncatula]
19 Hb_000189_100 0.2461148942 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
20 Hb_000940_160 0.2474400675 - - hypothetical protein VITISV_017596 [Vitis vinifera]

Gene co-expression network

sample Hb_004570_030 Hb_004570_030 Hb_007818_020 Hb_007818_020 Hb_004570_030--Hb_007818_020 Hb_007416_190 Hb_007416_190 Hb_004570_030--Hb_007416_190 Hb_011791_020 Hb_011791_020 Hb_004570_030--Hb_011791_020 Hb_004228_020 Hb_004228_020 Hb_004570_030--Hb_004228_020 Hb_011909_070 Hb_011909_070 Hb_004570_030--Hb_011909_070 Hb_002805_130 Hb_002805_130 Hb_004570_030--Hb_002805_130 Hb_007818_020--Hb_004228_020 Hb_006663_040 Hb_006663_040 Hb_007818_020--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_007818_020--Hb_052764_060 Hb_000832_320 Hb_000832_320 Hb_007818_020--Hb_000832_320 Hb_000189_100 Hb_000189_100 Hb_007818_020--Hb_000189_100 Hb_001268_380 Hb_001268_380 Hb_007818_020--Hb_001268_380 Hb_007416_190--Hb_007818_020 Hb_011218_070 Hb_011218_070 Hb_007416_190--Hb_011218_070 Hb_003506_070 Hb_003506_070 Hb_007416_190--Hb_003506_070 Hb_002086_030 Hb_002086_030 Hb_007416_190--Hb_002086_030 Hb_005291_040 Hb_005291_040 Hb_007416_190--Hb_005291_040 Hb_143986_010 Hb_143986_010 Hb_011791_020--Hb_143986_010 Hb_120470_010 Hb_120470_010 Hb_011791_020--Hb_120470_010 Hb_000526_060 Hb_000526_060 Hb_011791_020--Hb_000526_060 Hb_000123_350 Hb_000123_350 Hb_011791_020--Hb_000123_350 Hb_000117_070 Hb_000117_070 Hb_011791_020--Hb_000117_070 Hb_004032_040 Hb_004032_040 Hb_011791_020--Hb_004032_040 Hb_004228_020--Hb_001268_380 Hb_000321_150 Hb_000321_150 Hb_004228_020--Hb_000321_150 Hb_001967_030 Hb_001967_030 Hb_004228_020--Hb_001967_030 Hb_000977_120 Hb_000977_120 Hb_004228_020--Hb_000977_120 Hb_005539_090 Hb_005539_090 Hb_004228_020--Hb_005539_090 Hb_006117_080 Hb_006117_080 Hb_004228_020--Hb_006117_080 Hb_120803_010 Hb_120803_010 Hb_011909_070--Hb_120803_010 Hb_001047_200 Hb_001047_200 Hb_011909_070--Hb_001047_200 Hb_001645_140 Hb_001645_140 Hb_011909_070--Hb_001645_140 Hb_000236_470 Hb_000236_470 Hb_011909_070--Hb_000236_470 Hb_011909_070--Hb_004032_040 Hb_000577_030 Hb_000577_030 Hb_011909_070--Hb_000577_030 Hb_002805_130--Hb_000189_100 Hb_000540_110 Hb_000540_110 Hb_002805_130--Hb_000540_110 Hb_007234_010 Hb_007234_010 Hb_002805_130--Hb_007234_010 Hb_000940_160 Hb_000940_160 Hb_002805_130--Hb_000940_160 Hb_002805_130--Hb_004228_020 Hb_002805_130--Hb_007818_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0155902 0.0657353 0.0172922 0 0.0302915 0.0238445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00800547 0.0307726 0.0190198 0.0171688

CAGE analysis