Hb_004570_040

Information

Type -
Description -
Location Contig4570: 51910-67403
Sequence    

Annotation

kegg
ID rcu:RCOM_1186840
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002527459.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9SN90
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1186840 PE=3 SV=1
Gene Ontology
ID GO:0016021
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43489: 55833-55933 , PASA_asmbl_43490: 56606-56914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004570_040 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_185080_010 0.1576003333 - - -
3 Hb_003375_080 0.1778126532 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
4 Hb_000307_110 0.1823262123 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
5 Hb_000397_090 0.1918846076 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
6 Hb_005545_080 0.1923097813 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
7 Hb_000434_050 0.1969060216 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
8 Hb_007433_020 0.2003987595 - - hypothetical protein VITISV_005320 [Vitis vinifera]
9 Hb_000363_110 0.2027684556 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
10 Hb_011925_010 0.2034358453 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
11 Hb_000297_100 0.2039622071 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
12 Hb_004712_140 0.2045094352 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
13 Hb_001345_030 0.2049385448 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
14 Hb_000165_220 0.2061230397 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
15 Hb_078901_010 0.2071763814 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
16 Hb_001504_270 0.2076614332 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
17 Hb_008864_080 0.2084533609 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
18 Hb_000331_710 0.210053098 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_009247_020 0.2107583431 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
20 Hb_005833_020 0.2109322598 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]

Gene co-expression network

sample Hb_004570_040 Hb_004570_040 Hb_185080_010 Hb_185080_010 Hb_004570_040--Hb_185080_010 Hb_003375_080 Hb_003375_080 Hb_004570_040--Hb_003375_080 Hb_000307_110 Hb_000307_110 Hb_004570_040--Hb_000307_110 Hb_000397_090 Hb_000397_090 Hb_004570_040--Hb_000397_090 Hb_005545_080 Hb_005545_080 Hb_004570_040--Hb_005545_080 Hb_000434_050 Hb_000434_050 Hb_004570_040--Hb_000434_050 Hb_185080_010--Hb_000434_050 Hb_078901_010 Hb_078901_010 Hb_185080_010--Hb_078901_010 Hb_011287_020 Hb_011287_020 Hb_185080_010--Hb_011287_020 Hb_185080_010--Hb_003375_080 Hb_016404_010 Hb_016404_010 Hb_185080_010--Hb_016404_010 Hb_000805_150 Hb_000805_150 Hb_185080_010--Hb_000805_150 Hb_001004_010 Hb_001004_010 Hb_003375_080--Hb_001004_010 Hb_010589_130 Hb_010589_130 Hb_003375_080--Hb_010589_130 Hb_003375_080--Hb_078901_010 Hb_000819_040 Hb_000819_040 Hb_003375_080--Hb_000819_040 Hb_009476_010 Hb_009476_010 Hb_003375_080--Hb_009476_010 Hb_000181_080 Hb_000181_080 Hb_000307_110--Hb_000181_080 Hb_002284_020 Hb_002284_020 Hb_000307_110--Hb_002284_020 Hb_000297_100 Hb_000297_100 Hb_000307_110--Hb_000297_100 Hb_003086_050 Hb_003086_050 Hb_000307_110--Hb_003086_050 Hb_041290_030 Hb_041290_030 Hb_000307_110--Hb_041290_030 Hb_000103_400 Hb_000103_400 Hb_000307_110--Hb_000103_400 Hb_000363_110 Hb_000363_110 Hb_000397_090--Hb_000363_110 Hb_001345_030 Hb_001345_030 Hb_000397_090--Hb_001345_030 Hb_000003_420 Hb_000003_420 Hb_000397_090--Hb_000003_420 Hb_006911_060 Hb_006911_060 Hb_000397_090--Hb_006911_060 Hb_006698_020 Hb_006698_020 Hb_000397_090--Hb_006698_020 Hb_000359_080 Hb_000359_080 Hb_000397_090--Hb_000359_080 Hb_004712_140 Hb_004712_140 Hb_005545_080--Hb_004712_140 Hb_000117_110 Hb_000117_110 Hb_005545_080--Hb_000117_110 Hb_004924_030 Hb_004924_030 Hb_005545_080--Hb_004924_030 Hb_005545_080--Hb_000297_100 Hb_010327_010 Hb_010327_010 Hb_005545_080--Hb_010327_010 Hb_001677_130 Hb_001677_130 Hb_005545_080--Hb_001677_130 Hb_000434_050--Hb_078901_010 Hb_000015_180 Hb_000015_180 Hb_000434_050--Hb_000015_180 Hb_000434_050--Hb_000805_150 Hb_000434_050--Hb_010589_130 Hb_000220_090 Hb_000220_090 Hb_000434_050--Hb_000220_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0216989 0.237344 0.0422845 0.0196381 0 0.00280548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00557021 0 0.0176246 0.0239808

CAGE analysis