Hb_004584_010

Information

Type -
Description -
Location Contig4584: 2065-7250
Sequence    

Annotation

kegg
ID pda:103715912
description uncharacterized LOC103715912
nr
ID XP_009599307.1
description PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID Q8RU68
description Putative 22 kDa kafirin cluster; Ty3-Gypsy type OS=Oryza sativa GN=OSJNBa0022D10.4 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004584_010 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
2 Hb_026766_010 0.2570622468 - - -
3 Hb_003992_120 0.2717483387 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
4 Hb_000284_160 0.2937247129 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
5 Hb_003335_070 0.294091362 - - -
6 Hb_000603_240 0.2956841624 - - -
7 Hb_027751_030 0.2992183097 - - -
8 Hb_001437_290 0.3023036859 - - -
9 Hb_002615_100 0.3034373396 - - -
10 Hb_115326_010 0.3179111697 - - -
11 Hb_175450_010 0.3259190049 - - -
12 Hb_168418_010 0.3347760662 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_082730_010 0.3403484235 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
14 Hb_113733_010 0.3403800553 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
15 Hb_002843_190 0.3487913693 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
16 Hb_002240_080 0.3499314922 - - -
17 Hb_002259_050 0.3584134077 - - unnamed protein product [Vitis vinifera]
18 Hb_007849_030 0.3617296388 - - l-allo-threonine aldolase, putative [Ricinus communis]
19 Hb_001135_230 0.3664235848 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
20 Hb_009777_010 0.3684792313 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_004584_010 Hb_004584_010 Hb_026766_010 Hb_026766_010 Hb_004584_010--Hb_026766_010 Hb_003992_120 Hb_003992_120 Hb_004584_010--Hb_003992_120 Hb_000284_160 Hb_000284_160 Hb_004584_010--Hb_000284_160 Hb_003335_070 Hb_003335_070 Hb_004584_010--Hb_003335_070 Hb_000603_240 Hb_000603_240 Hb_004584_010--Hb_000603_240 Hb_027751_030 Hb_027751_030 Hb_004584_010--Hb_027751_030 Hb_026766_010--Hb_027751_030 Hb_026766_010--Hb_000284_160 Hb_026766_010--Hb_003992_120 Hb_000614_330 Hb_000614_330 Hb_026766_010--Hb_000614_330 Hb_026766_010--Hb_000603_240 Hb_002843_190 Hb_002843_190 Hb_003992_120--Hb_002843_190 Hb_010812_090 Hb_010812_090 Hb_003992_120--Hb_010812_090 Hb_035905_010 Hb_035905_010 Hb_003992_120--Hb_035905_010 Hb_010128_110 Hb_010128_110 Hb_003992_120--Hb_010128_110 Hb_001141_400 Hb_001141_400 Hb_003992_120--Hb_001141_400 Hb_000284_160--Hb_027751_030 Hb_000284_160--Hb_000603_240 Hb_027751_040 Hb_027751_040 Hb_000284_160--Hb_027751_040 Hb_000284_160--Hb_000614_330 Hb_001993_020 Hb_001993_020 Hb_000284_160--Hb_001993_020 Hb_000699_120 Hb_000699_120 Hb_003335_070--Hb_000699_120 Hb_105712_010 Hb_105712_010 Hb_003335_070--Hb_105712_010 Hb_003335_070--Hb_000603_240 Hb_000002_390 Hb_000002_390 Hb_003335_070--Hb_000002_390 Hb_010589_110 Hb_010589_110 Hb_003335_070--Hb_010589_110 Hb_005321_030 Hb_005321_030 Hb_003335_070--Hb_005321_030 Hb_000603_240--Hb_027751_040 Hb_000603_240--Hb_027751_030 Hb_000603_240--Hb_002843_190 Hb_027751_030--Hb_027751_040 Hb_027751_030--Hb_002843_190 Hb_002094_020 Hb_002094_020 Hb_027751_030--Hb_002094_020 Hb_001230_010 Hb_001230_010 Hb_027751_030--Hb_001230_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0340395 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0129751 0.0102107 0 0.00404747 0

CAGE analysis